Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00825 CAGCCACGGAGGCATTTGCTAACAACTGGATGGAGTGCGTTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCTCAGTTGAAAAGTGCTGGTTCCTTTGCAGTTCCCACTGGGCAGCAACTGAATCCTGGAACTCTCATGGATGTTGTTAATGCATTATCTACAAGAAGTGCTTTTAGTGTATGCTACAATCCAAGGTTTAGCTCTTCGGAATTCATCATACCTGTTCACAAATTCTTAAAGAGCCTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCTGAGCGGAGATTTACTGGACTAATTGCTGGAATCAGTGATGTCGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGCTAGGCTCAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTCCTGCTTCAAGTTCCAGCAACATGATGACAGCTGGTTTGAAGAGGACCCGGATTGGAATGACTTCAGCGAAGATGGAATTTCCTTCTCCCAATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCCTTTGATAGCATTAATGCTCAGAGTCCTCGGTTATATGACTTAGGGAGGTACTATCCTGGTCCAAACGGTTCTGGGATTCCTCTAACAGGGAATAACATCAGAATGCCTCACGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCCTTGTCAATCGAGGAGGCTCGAGCTAATGGTCGCTTTGGACATTTTGATGGTTATCAGTTACTTAACTCCAGAAATGGGTGGTCTGCTCAGATGCATGACAATGCTCCACATTTGCATGCATCCGTTACACCTGCACAAGTGTCATCTCCATCATCTGTGTTAATGTTTCAGCAAGCAGTTAATCCAGTTTCAAACTGTGATTATAATAATAAGAAACATAATAAGATGGAGGGTAGAGTGCATTACCAAAGTTTATGTACTTCTGAAGTAAAAGCTAGAACATTTGTTTCTCCCCCATCTGGTGATCTTACTTACTCTAGGCGAGTTCCGGAAGGTGCTAGTTCTTTAGGTATGTTTGATGTTCATAATCAGTTGGGTAGCTCACAGTCAAACAATTCTGTGTCAGCATTGAGAAAAAATCAAGAGATGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCACTGACTGAGGACGCACATGTTGCAAATAAAGAGGCTGATTCCTCTACCATCACTAGACCATTGAATACTGGACCTTCCTTTACTAGACTTGTAGAAGATGAGTTCCATCCCAGCCGGGCCCTCCCGAGCAAGTCGGTTGGAAGTAACTGCACCAAGGGTGTGTTGCAGTATTGA 1560 0.4372 QPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSAGSFAVPTGQQLNPGTLMDVVNALSTRSAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDIEAARLNRVSPWEIEPSGPASSSSNMMTAGLKRTRIGMTSAKMEFPSPNGIGTSDFGESLRFRKVLQGQEILGVNPPFDSINAQSPRLYDLGRYYPGPNGSGIPLTGNNIRMPHAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRFGHFDGYQLLNSRNGWSAQMHDNAPHLHASVTPAQVSSPSSVLMFQQAVNPVSNCDYNNKKHNKMEGRVHYQSLCTSEVKARTFVSPPSGDLTYSRRVPEGASSLGMFDVHNQLGSSQSNNSVSALRKNQEMVSSCKSSCRLFGFSLTEDAHVANKEADSSTITRPLNTGPSFTRLVEDEFHPSRALPSKSVGSNCTKGVLQY 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00825 519 Gene3D - 106 179 - -
Spst6g00825 519 Pfam Auxin response factor 69 149 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst6g00825 519 FunFam Auxin response factor 105 176 - -
Spst6g00825 519 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Spst6g00825 519 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 474 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst6g00825 519 Gene3D - 1 44 IPR015300 -
Spst6g00825 519 SUPERFAMILY DNA-binding pseudobarrel domain 2 43 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00825 Spst-Chr6 7563188 7566667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00825 1 299 B3 DNA Binding Superfamily AT2G33860 53.000 3.70e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst6g00825 Auxin_resp 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00825 K14486 - gmx:100810458 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00825 6 7563188 7566667 Spst6g00825 6 7563188 7566667 ECH