Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00816 ATGTCTGTGCTTCCTCTCTTCCTCTTCACTATGTTTCTCCTCCAACAACCTCCCTTCATATCTGCACTCAACCAAGACGGTTTATATCTCTACCAGTGGAAGCAATCCCTCGACGACCCTGACTCATCACTCGCCTCGTGGAACAACCGCGACACAACCCCATGCAATTGGGCCGGCGTCACTTGCGGCCCAAATACCACCACCGTCACCGCACTCGACCTCTCCAACTTCAACGTCGCAGGCCCATTCTCAGCCACCTTCCTCTGCCGCCTCCCCAACCTCACCTCCATCATCCTCTTTAACAACTCCATCAACCAAACCCTTCCTCTCCAAATTTCCCTCTGCACCTCACTCCTCCACCTCGACCTCTCCCAGAACCTCCTCACCGGCACCCTCCCCCACTCCCTCCCCCTCCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCGTCCCCCCCTCCTTCGGAACCTTTCAGAACCTCCAAACCCTCTCCCTCGTATTCAACCTCCTCGACGACGTCGTTCCGCCTTCTCTCTTCAACATTACCTCCCTCAAAACGCTCAACCTCTCCTACAACCCCTTCCACCCTTCCCCCATTCCTCCCTCCGTCGGCAACCTCACCAACTTGGAAACGCTCTGGCTCAGCGGGTGCAACCTTGTGGGCCCCATTCCCGACTCCCTCGGGAACCTCAAAAACCTTGGCGTCTTGGATTTGGCCTTCAACAACCTCTATGGACCCATCCCGAGTTCGCTCACTCGCATCAGCAGTCTCAAGCAGATTGAGTTATACAACAACTCGCTCTCCGGTGAATTGCCTAAAGGAATGTCCAACCTCACTTCGTTGAGACTCGTTGATGTTTCCATGAACCATTTGAGTGGACCCATTCCCGATGAGTTGTGTCGTTTGCCTCTCGAGAGTCTTAACCTCTATGAGAATGGTTTCACCGGGGAGTTGCCGCAGAGTATTGCCGACTCGCCGAACCTCTATGAGCTTAGGTTGTTCGGGAACAAACTCAGCGGGAAATTGCCGGACAGTTTAGGGAAGAATGCTCCTCTGAGGTGGCTTGACGTTTCCACCAACCGGTTCTCCGGTGGGATTCCGGCGAGTCTCTGCGAGCACGGCGAGTTGGAGGAAATGTTGATACTGGATAACGAGTTCTCCGGGGAGATTCCGGCGAGTTTGGGCGCGTGTCGGAGCTTGTCACGAGTGAGGTTGGGTACGAACCGTCTGTCCGGCGAGGTTCCCGCGGCTATGTGGGGTCTTCCACATGTATACTTGCTTGAACTAATGGATAACTTGTTTAGTGGCTCCATCGCGAGGACCATTGGTGGGGCGAGGAATTTGTCGTCGTTGATTCTGACGAAGAACAATTTCTCCGGTGTGATCCCCGATGAGGTTGGGTGGTTGGAGAATCTTCTGGAGATTTCCGGTGGTGAGAACAGGTTCAGTGGGTCGTTGCCTGGGAGTATTGTGAATCTTCGGCAGCTTGGGACTCTTGATCTCCACAACAATATGTTCTCTGGGGAGCTTCCCAAGGGGATTCAATCGTGGAAGAAGCTCAATGACTTGAATTTGGCTAATAATGAAATTGGTGGGAAGATTCCTGATGAAATTGGAAGTTTGGCAGTCTTGAATTTTCTTGATCTTTCCAACAATCAATTTTCTGGGAATGTCCCTCTGGGGTTGCAGAATTTGAAGCTCAATCAGCTCAATTTGTCTTTCAATAGGCTTTCTGGAAAGCTTCCTCCACAGCTGGCCAAGGATATGTACAGGGCTAGTTTTATTGGTAATCCTGGCTTGTGTGGGGATTTCAAAGGTTTATGTGATGGCAATGATCGGGATAAGAATAAGGGTTTTGTGTGGATTCTGCGAGCAATTTTTATAGTTGCCACTTTGGTGTTTGTCATCGGTGTCGTCTGGTTTTACTTCAGGTACAGGAATTTCAAGAATGCTGGGAGATCTGTTGATAAATCAAAGTGGACTTTGATGTCGTTTCACAAACTGGGTTTCAGCGAAGATGAGATCTTAAATTGCCTCGATGAAGATAATGTGATAGGAAGTGGGTCTTCCGGGAAGGTTTACAAGGTTGTGCTAACCAGTGGGGAAGTGGTGGCTGTGAAGAAGATATGGAGTGGGGTCAGGAAGGAAATAGATGGTGGAGATGTGGAGAGGGCTCAGTTTCATCAAGACAGTGCTTTTGACGCAGAGGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACGACAAGGGATTGCAAGCTATTGGTTTATGAGTATATGCCGAATGGTAGTCTGGGTGATTTGCTGCATAGCAATAAAGGAGGGTTGTTGGATTGGCCAAATAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATCTCCATCACGACTGCGTTCCTTCAATTGTCCATAGAGATGTGAAATCTAATAACATCTTGCTGGATGGGGACTTTAGTGCAAGGGTGGCAGATTTTGGAGTGGCTAAGGTAGTTGATGCCACCGGGAAAGGAACTAAATCCATGTCTGTCATAGCTGGGTCTTGTGGGTACATTGCACCAGAATATGCATACACACTGAGAGTGAATGAGAAGAGTGACATATATAGTTTTGGTGTTGTCGTACTTGAGTTGGTTACTGGAAGGAGGCCCATTGACCCTGAATTTGGGGAAAAAGACCTAGTTATGTGGGCGTGCACCACCTTGGATCAGAAGGGCGTGGACCATGTGATTGACTCGAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTTCTCAACATTGGCCTCATGTGCACCAGTCCTCTTCCAATCAACCGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAGGTGAGCACAGAGAACCAAACGAAAGCAACCAAGAAAGATGGAAAGTTGTCCCCTTATTACTATGACAATGGGTCAGATCATGGAAGTGTTGCTTAG 3000 0.4947 MSVLPLFLFTMFLLQQPPFISALNQDGLYLYQWKQSLDDPDSSLASWNNRDTTPCNWAGVTCGPNTTTVTALDLSNFNVAGPFSATFLCRLPNLTSIILFNNSINQTLPLQISLCTSLLHLDLSQNLLTGTLPHSLPLLPNLRYLDLTGNNFSGPVPPSFGTFQNLQTLSLVFNLLDDVVPPSLFNITSLKTLNLSYNPFHPSPIPPSVGNLTNLETLWLSGCNLVGPIPDSLGNLKNLGVLDLAFNNLYGPIPSSLTRISSLKQIELYNNSLSGELPKGMSNLTSLRLVDVSMNHLSGPIPDELCRLPLESLNLYENGFTGELPQSIADSPNLYELRLFGNKLSGKLPDSLGKNAPLRWLDVSTNRFSGGIPASLCEHGELEEMLILDNEFSGEIPASLGACRSLSRVRLGTNRLSGEVPAAMWGLPHVYLLELMDNLFSGSIARTIGGARNLSSLILTKNNFSGVIPDEVGWLENLLEISGGENRFSGSLPGSIVNLRQLGTLDLHNNMFSGELPKGIQSWKKLNDLNLANNEIGGKIPDEIGSLAVLNFLDLSNNQFSGNVPLGLQNLKLNQLNLSFNRLSGKLPPQLAKDMYRASFIGNPGLCGDFKGLCDGNDRDKNKGFVWILRAIFIVATLVFVIGVVWFYFRYRNFKNAGRSVDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLTSGEVVAVKKIWSGVRKEIDGGDVERAQFHQDSAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSNKGGLLDWPNRYKIAVDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGDFSARVADFGVAKVVDATGKGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVVLELVTGRRPIDPEFGEKDLVMWACTTLDQKGVDHVIDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVSTENQTKATKKDGKLSPYYYDNGSDHGSVA 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00816 999 SUPERFAMILY RNI-like 72 419 - -
Spst6g00816 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 204 968 - -
Spst6g00816 999 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515
Spst6g00816 999 Pfam Leucine Rich Repeat 189 212 IPR001611 GO:0005515
Spst6g00816 999 Gene3D Transferase(Phosphotransferase) domain 1 774 992 - -
Spst6g00816 999 SUPERFAMILY L domain-like 358 607 - -
Spst6g00816 999 ProSiteProfiles Protein kinase domain profile. 685 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00816 999 Pfam Leucine rich repeat 92 152 IPR001611 GO:0005515
Spst6g00816 999 SMART LRR_typ_2 139 162 IPR003591 -
Spst6g00816 999 SMART LRR_typ_2 284 308 IPR003591 -
Spst6g00816 999 SMART LRR_typ_2 212 236 IPR003591 -
Spst6g00816 999 SMART LRR_typ_2 499 522 IPR003591 -
Spst6g00816 999 SMART LRR_typ_2 163 187 IPR003591 -
Spst6g00816 999 SMART LRR_typ_2 91 115 IPR003591 -
Spst6g00816 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Spst6g00816 999 FunFam Receptor-like protein kinase HSL1 669 773 - -
Spst6g00816 999 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Spst6g00816 999 Gene3D Ribonuclease Inhibitor 310 616 IPR032675 -
Spst6g00816 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 23 187 - -
Spst6g00816 999 FunFam Receptor-like protein kinase HSL1 309 616 - -
Spst6g00816 999 SMART serkin_6 685 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00816 999 Pfam Protein kinase domain 687 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00816 999 Gene3D Phosphorylase Kinase; domain 1 669 773 - -
Spst6g00816 999 FunFam Leucine-rich receptor-like protein kinase family protein 205 303 - -
Spst6g00816 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Spst6g00816 999 Gene3D Ribonuclease Inhibitor 22 201 IPR032675 -
Spst6g00816 999 MobiDBLite consensus disorder prediction 973 999 - -
Spst6g00816 999 SUPERFAMILY Protein kinase-like (PK-like) 680 966 IPR011009 -
Spst6g00816 999 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Spst6g00816 999 Gene3D Ribonuclease Inhibitor 258 309 IPR032675 -
Spst6g00816 999 Gene3D Ribonuclease Inhibitor 202 257 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00816 Spst-Chr6 7464197 7467544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00816 18 999 Receptor kinase-like Gene Family AT1G28440 67.814 0.0 1376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst6g00816 Pkinase 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00816 - - gmx:100776936 1784.23