Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00813 ATGGGGACGGACTACTATGGGATTTTGGAGGTTGACAAGAATGCCTCAGATGAAGAATTGAAGAAAGCTTACAGAAAGCTTGCAATGAAATGGCACCCTGATAAGAACCCAACCAACAAGAAAGAGGCTGAGATTAAATTCAAACAGATATCTGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGACCGGTATGGAGAAGGTGGCCTTAAAGGTGGAATGCCGACAACAGATGAAGGTGTGGCTTCCTTCTTCCGAACTGGGGATGGCCCTCCACCATTTATGTTCAATCCCAGAAATGCAAACAACATTTTTGCAGAAGTGTTTGGGAATTCGAACCCCTTTGGAGGAATGGGAATGGGGTTTGGCTGTGGTGGCAGAGGCAGAGGTATGGGCATGAGTGGTGGAACGTGGGTATCAAGGTCCTTTGGTGGAATGTTTGGCAGTGACATGTTCGGAGAAGGCAGGCCAATGAATCAAGGTCCACGCCGCAAGGCTCCTCCCATCGAAAATACATTACTTTGCAGCCTTGAGGAGCTCTACAAGGGGAGTACCAGAAAGATGAAAATCTCAAGGGAAATTACACATACAAGCGGGAGAGTATTTCCTGTGGAGGAAATATTGAACATTGTTATCCAACCAGGCTGGAAGAAGGGAACCAAAATCACTTTCCCAGAGAAAGGAAATGAACAGCCAAATGTCATTGCAGCAGATCTTGTGTTTATTATTGATGAGAAACCTCACAGTATGTTTACAAGAGTTGGTAATGATTTGGTTGTGACGCAAAAGATATCACTTACAGAAGCTGAAGCTCTACCAGGCTACACCATCCAACTTACAACTCTTGATGGCAGGGGTCTGACCATCGCCATAAACAATGCCACTGATCCAGATTACGAAGAAGTCATCACTGGGGAAGGCATGCCGATTTCCAAAGATCCTTCAAAGAGGGGTAACCTTAGGATCAAATTCAAGATCTAA 993 0.4502 MGTDYYGILEVDKNASDEELKKAYRKLAMKWHPDKNPTNKKEAEIKFKQISEAYEVLSDPQKRAIYDRYGEGGLKGGMPTTDEGVASFFRTGDGPPPFMFNPRNANNIFAEVFGNSNPFGGMGMGFGCGGRGRGMGMSGGTWVSRSFGGMFGSDMFGEGRPMNQGPRRKAPPIENTLLCSLEELYKGSTRKMKISREITHTSGRVFPVEEILNIVIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHSMFTRVGNDLVVTQKISLTEAEALPGYTIQLTTLDGRGLTIAINNATDPDYEEVITGEGMPISKDPSKRGNLRIKFKI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00813 330 FunFam Dnaj homolog subfamily b member 169 250 - -
Spst6g00813 330 CDD DnaJ 4 59 IPR001623 -
Spst6g00813 330 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Spst6g00813 330 Gene3D DnaJ domain 2 123 IPR036869 -
Spst6g00813 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 263 IPR008971 GO:0006457|GO:0051082
Spst6g00813 330 PRINTS DnaJ domain signature 62 81 IPR001623 -
Spst6g00813 330 PRINTS DnaJ domain signature 24 39 IPR001623 -
Spst6g00813 330 PRINTS DnaJ domain signature 42 62 IPR001623 -
Spst6g00813 330 PRINTS DnaJ domain signature 6 24 IPR001623 -
Spst6g00813 330 SUPERFAMILY Chaperone J-domain 3 99 IPR036869 -
Spst6g00813 330 FunFam DnaJ subfamily B member 13 252 330 - -
Spst6g00813 330 Gene3D - 170 251 - -
Spst6g00813 330 Gene3D - 252 330 - -
Spst6g00813 330 SMART dnaj_3 3 62 IPR001623 -
Spst6g00813 330 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Spst6g00813 330 FunFam DnaJ subfamily B member 13 3 123 - -
Spst6g00813 330 CDD DnaJ_C 171 330 - -
Spst6g00813 330 Pfam DnaJ C terminal domain 174 330 IPR002939 -
Spst6g00813 330 SUPERFAMILY HSP40/DnaJ peptide-binding domain 255 330 IPR008971 GO:0006457|GO:0051082
Spst6g00813 330 Pfam DnaJ domain 4 67 IPR001623 -
Spst6g00813 330 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00813 Spst-Chr6 7429633 7432616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00813 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 4.85e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00813 K09510 - gmx:100804763 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00813 6 7429633 7432616 Spst6g00813 6 7429633 7432616 ECH