Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00793 ATGGAGTCTGAAGAGAAAGACCAGAACTTGAGGCCAGATTCTTCTCTGGCTGAAAACCCTGAAATAATGCCACCATCTAGTATGCATTGCATGGAAGAGAATGATGCCATGCTCAAAACATCTGTTCCTTCATGCGAGATAATGACATTGAAAAAGGAAGAACTGCACCTGAAATATGACATTTCAAATGATGCAAAATCAAGAGAAAATCCGACTTCTGTTGAAGATTGCAAAAGTCAAGGATTAGATGTTGATGTTGAAAATGCTGGATCACTTCTGCAGAAGGAAACACTTGGAGTTTACAGTGAGGCAGGTTGCAATACGAAAGCTAATTTGAATAATGAGAATGATATTGATTCAAGGGCCAGGGCCACCAAGTCATCTAGTGACACTGGACAAGGTATGGTTACTGGCCTCCTTCCAAAAGATTGTCTTGTTGAGGATGCTTATGGTGGTCAGAATTCTAGTAACAAAATCACGCAGTTAGAGATAGTGTCAAGGGATGATGTGAAGCAAATGCCGTCAAGGACTAGAAGTCTGTCTCCCAGTGCTGAGATTAGAAATGGAAACAAACGCCCCAAAATGATATGTGACTTTTTTGCTAAAGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGATACCGAGGACAAGACTGACCAGGAGGCTGAAACTGACGTAGATACTACTCATCAGAAGAGAGAATTGAAAGTTGAAGAAGGTGTTAGGGAAAATGTTCAGAGATCAAGGATGAATGATTACGAAGCAATCCCTAGTTGGCATCAATCTCAAGAAAAACAGAACTTTAAGATGAAGGATAACTTGTTTTCAGATAATAGATTTGCGTTTAGTTCAACAAACAATTTTTTCAGCCCAAATCAGGATGGAATAGCTACTCTTCGGAACCAACATATGTACAAAGGATATGCTTCCACTCTTTTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCTTCAAGTATGTCACTCTCTCACAGGATTTCTACCCAATCAGGATGTTCATTGCCTCTTAGTTCATCTTTGGGTGCTAGTAATGTGAATTCTCAAAACCTTTTGAACACTGATAAAGAATGTCTCACCTCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTCCTCTAGTTAGTTCGTCCAGGGTTCCATCTTATCCTACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTGCCCTTTCGGCCATCTTTTTTTATAACTTCCATGAATGTATCATCTGCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCAAATGTACAGGCTTCATCACAGGTTCAGATATATGGTAATTCTGATGTAGTTGGGAAACACACGCCCAGTCTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTAATGAAAATGACCCAAACAACAATTATGTTCCTCATGAAAAAGATTATCTTCCTACTGAAACAGAGATAACTTCAGGAACTTATGTAAACTATCAAAACGATAGAATGGGACAAAATACCTTTTGTATTGCAGATAGTACAAAAAAGGAGAGAGACATGACTGAGCATGATGCTAGACGTCACAGTGAAGGATCAGGGCACAAAACAAAGAGAGTAGACAGGGATAAGAAAAATCATGATATGGACATTGATGTTCAGATGGATGGCAGCACACAGAAGGAACCGAAGGCACTAAAAATGTTACGTGCAGCTCTTGTAGATCATGTAAAAGAGTTGTTAAAACCAGCTTGGCATGAAGGTCGTCTCAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCTCATCAGATTCCGACCATAGATACTGCTAAGCAATACGTTTCTTCAAGTCGGATGAAAATTGCAAAGCTGGTCAATGGATATGTCAACAAATATGGAAAATCTTGA 2031 0.3909 MESEEKDQNLRPDSSLAENPEIMPPSSMHCMEENDAMLKTSVPSCEIMTLKKEELHLKYDISNDAKSRENPTSVEDCKSQGLDVDVENAGSLLQKETLGVYSEAGCNTKANLNNENDIDSRARATKSSSDTGQGMVTGLLPKDCLVEDAYGGQNSSNKITQLEIVSRDDVKQMPSRTRSLSPSAEIRNGNKRPKMICDFFAKGWCIRGSSCSFLHIKDTEDKTDQEAETDVDTTHQKRELKVEEGVRENVQRSRMNDYEAIPSWHQSQEKQNFKMKDNLFSDNRFAFSSTNNFFSPNQDGIATLRNQHMYKGYASTLLSHSPNSSLVTQFPASSMSLSHRISTQSGCSLPLSSSLGASNVNSQNLLNTDKECLTSKSTFSGSGREDFPLVSSSRVPSYPTGYKSKICSYDWEPSVPFRPSFFITSMNVSSAGDLYDPLRDSIEIPNIGDGSLKASLLIQGSNVQASSQVQIYGNSDVVGKHTPSLNDDKSSVSSHNKFNENDPNNNYVPHEKDYLPTETEITSGTYVNYQNDRMGQNTFCIADSTKKERDMTEHDARRHSEGSGHKTKRVDRDKKNHDMDIDVQMDGSTQKEPKALKMLRAALVDHVKELLKPAWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIPTIDTAKQYVSSSRMKIAKLVNGYVNKYGKS 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00793 676 Gene3D - 184 269 - -
Spst6g00793 676 MobiDBLite consensus disorder prediction 168 188 - -
Spst6g00793 676 MobiDBLite consensus disorder prediction 547 575 - -
Spst6g00793 676 ProSiteProfiles Zinc finger C3H1-type profile. 191 218 IPR000571 GO:0046872
Spst6g00793 676 MobiDBLite consensus disorder prediction 109 135 - -
Spst6g00793 676 MobiDBLite consensus disorder prediction 481 509 - -
Spst6g00793 676 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 91 675 - -
Spst6g00793 676 MobiDBLite consensus disorder prediction 1 27 - -
Spst6g00793 676 MobiDBLite consensus disorder prediction 481 505 - -
Spst6g00793 676 SMART c3hfinal6 192 217 IPR000571 GO:0046872
Spst6g00793 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 196 215 IPR000571 GO:0046872
Spst6g00793 676 SUPERFAMILY CCCH zinc finger 191 215 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00793 Spst-Chr6 7171533 7174023 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst6g00793 zf-CCCH 9.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00793 - - vra:106775763 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00793 6 7171533 7174023 Spst6g00793 6 7171533 7174023 ECH