Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00790 ATGGATGAAAGTTGGAGTGAGGGGAAAAGGAGCATGAACTACAAGGAGGAGGAGGATGATTATGAAGAAGAGGACGAGGAGGAGGAGAGTGAGTATGGAGAGGATGGTAGGAAGAAGAGGGTGGTCACTAATAAGAGAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCATGTCAAGTTGATGGTTGTAATGCTGATCTAAGTGATGCTAAGCCCTACCACAGGCGCCACAAGGTTTGTGAGTACCATGCCAAGGCTCCCGCTGTACTCATTGCAGAGCAGCACCAACGGTTTTGCCAACAATGCAGTAGGTTTCATGAGCTATCAGAATTTGATGAATCAAAAAGGAGTTGCAGAAGACGTTTGGCTGGACATAATGAGAGGCGGCGCAAAAATGCATCGGAATATCAAGCACATTGA 420 0.4738 MDESWSEGKRSMNYKEEEDDYEEEDEEEESEYGEDGRKKRVVTNKRGSKAGGSMPPSCQVDGCNADLSDAKPYHRRHKVCEYHAKAPAVLIAEQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNASEYQAH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00790 139 Pfam SBP domain 58 131 IPR004333 GO:0003677
Spst6g00790 139 MobiDBLite consensus disorder prediction 17 31 - -
Spst6g00790 139 SUPERFAMILY SBT domain 56 136 IPR036893 GO:0003677|GO:0005634
Spst6g00790 139 FunFam Squamosa promoter-binding-like protein 14 49 119 - -
Spst6g00790 139 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 133 IPR044817 GO:0003677
Spst6g00790 139 Gene3D - 48 119 IPR036893 GO:0003677|GO:0005634
Spst6g00790 139 Coils Coil 11 31 - -
Spst6g00790 139 MobiDBLite consensus disorder prediction 112 139 - -
Spst6g00790 139 MobiDBLite consensus disorder prediction 1 16 - -
Spst6g00790 139 ProSiteProfiles Zinc finger SBP-type profile. 55 132 IPR004333 GO:0003677
Spst6g00790 139 PIRSF SBP 6 139 IPR017238 GO:0003677|GO:0003700|GO:0009908
Spst6g00790 139 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00790 Spst-Chr6 7133937 7135501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00790 58 135 SBP-box Gene Family AT2G33810 74.359 1.33e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst6g00790 SBP 5.6e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00790 6 7133937 7135501 Spst6g00790 6 7133937 7135501 ECH