Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00787 ATGTCGGGTAACTGTGAGAAAATGGTAGTCATCCCTCCAACGACCAACCAATGGCCACAGGTGGATGATCATAAGGTCTTCAACAATAGTAAGGTAATGGAAAAACCAGATCAAGAGCTTGTGCAGCAGCAGCTGCAACAAGCCCTCAAGTGCCCTCGTTGTGACTCATCTAACACGAAGTTCTGCTACTACAACAACTACAGTTTGTCTCAGCCACGACACTTCTGCAAAGCCTGCAAGCGCTATTGGACAAGAGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGAGGGTGCAGAAAAAACAAGCGTGTCAAGCGTCCAATGACAAACACTTCTTCTGCTGCCATTGACACTGCTTCTTCTTCTAATTCTTCTTCTGCTCTCACTGCTGCTTCGCAACCCCAGATCGATACTGCTTCAACCTCGAATCACATCAACCCTTTGTTTTATGGGTTGCCAAGTAGCTCCAGCGATGTAAATCTTCCACTGTTCCCTAGGTTTGGTTCTAGAATCTCCAGTTCCGGGTTTGATCTTCAGCTGAATAATGCCCTTGGATTAGGTTTTTCATCCGGGGTTGTGTCCAATGAAGCTAGTGAGAATAACGGTTTTAGAAACGGGTTTGGTTCAAATAACGCGCTTCTTTCAAGTTATAATTCCATTTTTGGTTCTTCTTCAAATTCTACATCCACTACTCCAGCTATGTCTTCTCTGTTGAGCTCTACTTTGCTTCAACAGAAGTTCATCGGTAGTGGAATGAAAGATGGTGTTGATAGCAACACTTTCCAGCATGGCTTAGGCTTAACCCCACTAGAGCACTTACAGATGGCTAGTGATAACAGCGAGGCAGGAACGGGGGCTTTAAAAGATGTGAAAGTAGAATTGGGACAAAACAACAAGTTGGAGTGGAATGGTGCTTGTCAAAACCAGATCCAGCATGTGGGCTTGTACGACCCTTCGCTTTATTGGAATAATTCCACAACAGCTTGGGGTGTTTGGAACGATCAAGCTGCTAATATTGGTTCTTCAGTCACTTCTCTGATCTAG 1044 0.4502 MSGNCEKMVVIPPTTNQWPQVDDHKVFNNSKVMEKPDQELVQQQLQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMTNTSSAAIDTASSSNSSSALTAASQPQIDTASTSNHINPLFYGLPSSSSDVNLPLFPRFGSRISSSGFDLQLNNALGLGFSSGVVSNEASENNGFRNGFGSNNALLSSYNSIFGSSSNSTSTTPAMSSLLSSTLLQQKFIGSGMKDGVDSNTFQHGLGLTPLEHLQMASDNSEAGTGALKDVKVELGQNNKLEWNGACQNQIQHVGLYDPSLYWNNSTTAWGVWNDQAANIGSSVTSLI 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00787 347 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Spst6g00787 347 MobiDBLite consensus disorder prediction 98 135 - -
Spst6g00787 347 Pfam Dof domain, zinc finger 47 103 IPR003851 GO:0003677|GO:0006355
Spst6g00787 347 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 229 IPR045174 GO:0003700|GO:0006355
Spst6g00787 347 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Spst6g00787 347 MobiDBLite consensus disorder prediction 107 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00787 Spst-Chr6 7110159 7111420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00787 49 347 C2C2-Dof Transcription Factor Family AT1G28310 42.405 4.59e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst6g00787 zf-Dof 1.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00787 - - gmx:778098 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00787 6 7110159 7111420 Spst6g00787 6 7110159 7111420 ECH