Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00778 ATGGAGAACAACACTAGACCATCCAGAGTTGATAGAAAAATCATTGAGAGGGATAGAAGAAATCAAATGAAAGCTCTCTACCGCAAACTCAACTCACTTGTGCCTCATCAAAGATCAAAAGTGGCCATTTCACTGACGGATCAGCTAGAAGAAGCAACAAACTACATAAAGAAATTACAGATGAATGTGGAGAAAATGAAGGAGAAGAAGAACATGCTGCTAGGAATTGAAAGGCCAACTGTGAGAATGAAGGGAGGAGGAGAGAGAGTAGGGTTAAAATCGCCACGGGTTGAGATCCAACAAATGGGTTCAGCCTTAGAGGTTGTTCTAATAACTGGGTTGTATTCTGAGTTCATGTTCAGTGAAACCATTCGTATTCTTCATGAAGAAGGAGTAGATGTTGTTAACGCCAGTTATAAAGTTATCGAAGATACAGTTTTCCATTCAATACACTGTCAGGACGATAAATCTGCCAACGGAGCAACTAGGATGTCTGCGAGGCTGAAGAACTTCATCTTTGATTCTAGCTACTGTGGTTTTTAA 543 0.4033 MENNTRPSRVDRKIIERDRRNQMKALYRKLNSLVPHQRSKVAISLTDQLEEATNYIKKLQMNVEKMKEKKNMLLGIERPTVRMKGGGERVGLKSPRVEIQQMGSALEVVLITGLYSEFMFSETIRILHEEGVDVVNASYKVIEDTVFHSIHCQDDKSANGATRMSARLKNFIFDSSYCGF 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00778 180 Coils Coil 42 69 - -
Spst6g00778 180 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Spst6g00778 180 FunFam Transcription factor bHLH162 1 85 - -
Spst6g00778 180 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 169 - -
Spst6g00778 180 Gene3D - 1 82 IPR036638 GO:0046983
Spst6g00778 180 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
Spst6g00778 180 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 8 75 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00778 Spst-Chr6 7042106 7043028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00778 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 41.989 2.68e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g00778 HLH 7.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00778 - - gmx:100814407 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00600 3 9623465 9633763 Spst6g00778 6 7042106 7043028 PCT