Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00730 ATGAAGACGGCGCGCGTAGAAGAGCACGAAAAGCATGACATCATAAGTGTATTGGCAGTTCCAAACTCCCTCCTCACAGAAACAGACAACCATCCTTATTCTCCTCGCATACCTAGTGTTCTTTCATCCCTGGAGAGAGTTGAAGCTGGACCCTTGACCATCACCATGTATAGCATGGATTCATCTTCAGGATCTCACACTCATCAGCACCCTCTTCTTCCTCCTGGGTTTCGGTTCCACCCCACAGATGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTATTGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCCTGGGAACTCCCAAGTAAAGCCACTTTTGGTGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATAGGAAATACCCAAATGGGGCAAGGCCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCTACCGGAACTGACAAGCCCATACTTGCTTCTCATGACCACCACAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGCAAGCCTCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGTTGGCAGTTCCTCGAATTCTACCTCAAAACCACCTTCTGTACCTGCAGATCATGCAAGTAGTAGTAAGAAAAACTCCTTGAGGCTTGATGACTGGGTTTTGTGCCGGATATACAAGAGAAACAACAGTACCATCTTGCCAAGGTTTCCTTTGATGGAGCGGAATAAGGAGCTATCTACGGAGAGTACTATGCTACCAATGATGTCAACTTTGTCAGTGGCCAATAATAACATCTCTCAGAATTCCAAACCCTCATCTTCTAGAAGCACAAGTTATGGACCCCTGGGAGTAGAAAATGATGATAACTTCTTTGATGGAATCTTAGGAGTTGACAATAGCATGCAGCAAGATGTTTCTGATTTCCACCAAGTCTCTTCAAAGGGAATATACCCTGTGAAACGAGCACACTCGTCACAGTTTTGGAATGACACAGGGTCATCATCTTCTAGCAGAAGATTCCATTGTGATCTCAATGAAGGAAGCAACACTGCTGATCATGAAGACAATTCCTTCGTTTCTCTGCTTAGCCACCTTCCACCGAACACAGCATTTCACCCAAATGCACTTCTTGACCCTGTTAGTAATGATGTATTGAGGCAACAGTTTCAACTTCCAAGCATGAACTGGAATGTTTAG 1236 0.4515 MKTARVEEHEKHDIISVLAVPNSLLTETDNHPYSPRIPSVLSSLERVEAGPLTITMYSMDSSSGSHTHQHPLLPPGFRFHPTDEELVVHYLKRKADSVPLPIAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDKPILASHDHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVGSSSNSTSKPPSVPADHASSSKKNSLRLDDWVLCRIYKRNNSTILPRFPLMERNKELSTESTMLPMMSTLSVANNNISQNSKPSSSRSTSYGPLGVENDDNFFDGILGVDNSMQQDVSDFHQVSSKGIYPVKRAHSSQFWNDTGSSSSSRRFHCDLNEGSNTADHEDNSFVSLLSHLPPNTAFHPNALLDPVSNDVLRQQFQLPSMNWNV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00730 411 Pfam No apical meristem (NAM) protein 74 200 IPR003441 GO:0003677|GO:0006355
Spst6g00730 411 ProSiteProfiles NAC domain profile. 73 240 IPR003441 GO:0003677|GO:0006355
Spst6g00730 411 SUPERFAMILY NAC domain 65 240 IPR036093 GO:0003677|GO:0006355
Spst6g00730 411 MobiDBLite consensus disorder prediction 276 295 - -
Spst6g00730 411 PANTHER NAC TRANSCRIPTION FACTOR 56 73 268 - -
Spst6g00730 411 Gene3D NAC domain 82 244 IPR036093 GO:0003677|GO:0006355
Spst6g00730 411 FunFam NAC transcription factor 56 82 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00730 Spst-Chr6 6620521 6622763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00730 70 410 NAC Transcription Factor Family AT1G61110 54.203 4.16e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst6g00730 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00730 - - gmx:100792372 580.867