Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00728 ATGGGATTGAGACCAGCCTCGCTCTTCGATTCCGAGATTCGCCACCGGAGGTTCTCGGCGATGATGGCGGATGAGGGATTCGGTTACTCGTGCTTCTTGGATGGTGACGGGGACGCCGCCGATGACGATAAGTTCTGCATCGATCTGGAAACCGTTATGAGCGTTCTGGACGAGGATACCGATCCTTCCGAGAGTAGTCCTGAGGATTTTTCATTGAAAAATATTTCACCCGGTGAATCTGGCATCCATGATAATTTTCTTCTCCAAAATGGGAATTCTGTGCTTGAATGTGTACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCTCAAATGCTCTTGCTGGTGGTTACAGGGACCATGAAAGTGATGATTTTTGCTTCACAGAAAGGACAGGAGTTTCTAATTGTGAGGTGCCTGCTTATATTGCAGGCACAAGGTTTCCTGATCCAGAGGTGAATTCAAGCAATGTAGCTGTATGCGGAGATGGTTTGAAACTGACTATGTGGAAGTGTGAAAATGATAGCCAAATCAAGCATGTAGGATATGGTGCAAAATCCGAATATGCTTCACACGACTCTATCAATGAGAATATGGATGCAAAATTTGACAATCATGAAGCCTATATGAAAGACAGCATTGGACCTTCTGGTAAACAGGAAAATGACTCCTGTACATCATATGAAATGTCGTTTGCAGATGCTGATAGATCATCACATGTTGCAACTTCAACTGATTCTTCTATTTGCCAAGGTTCCAATGTTCCCAGTGATTTTAGTGACTATTATCCATCTTTTAATATTTACCAAAGTATGGATGATAGACCTGTTGTTGGCAACACTTCTGGTTGTTTGTTTGATGGTGTTTATCCTAACGTGTGGGAAAATGAAAGAATGATGACGAACATGAAGGTTACTAAAATGGAGTTATTTACTGATACAAGTGGTGGCATGCATTCCATCATTAATGGTGGAATATCTTTTCAAGATACTCAATATACGTACCCAGATAGTAAATATGCATCATTTTTTCCTGGTAATGCTCTATTTGAAGACAGTGCATCAGTGCAACACTCAACTTGTGCTTCATATGTTTCCCTTGAAGGTCAATCACTTAATGGCAAAGCAGAACGAGACGAAGTGTTTATACCTTACCAAAATTGTGCTCACAGTGATGATGCTGAGTTCAATGTTGGTCAAGAGATGAAACAACTATCTGGTGCTTTCCCTGTTGTTGGATCTCTGGGTAATGATTTATTCAAGTGCGAGGATGGTGTTACATTTTCAACGACTGAGAAACCCAAATATTATCAATCTGCTATTGATGGAGCTGCCAATTACTTTCCAGGAAATATGGGAAATTTAAATTTAAAACCATTTGACAAATCTTTGTATAATGTCCAGCCATCAATTGCCAGTGGGAAGCGGTATAACTGTGTTATGAGTGAAGAAGAAGGCAAAACAATTGAGCATAGAAGTATTGATTCTCAGCTTTCAAAAGGAAGTATTGACAGATCCAATGTTGAGGATGATTATGATGTTTGCATCATTGAAGACATGAGTCACCCTGCACCTATAAGTAGATCAGCAGAGCTTGGGAATTCCCTTAATACATCACAATCTTTTAGAGGTGGTTACACTCATTCTCATATGGTGGGAGGTATGAGACCCAAGGCGCGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTATCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTTGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTATACTGTTCTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTATCGACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTGAATAAATGCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAATCTGGATGCAGATGATGATCAGCTTCCTGAGAGTGGTGTAGTGAAGAACGAATCTAATATGGGTCAGGATTTGTCTAGCAGAAATCCAAATAAGAACACAAATTTGTTACTGCATGTAAAGGGAAGGCCATCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGACGAGTTGCACAATAAGGTAACTGACAAAGCACATCTTTCTGTGCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAACTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATCCTGCAATATCCAGTAAGAAAAGGAAATGCCCTCCTAGTGCTAAAAGTAAGAAGAAGGGATTGGACGGTGTGATGCTTGAATCTGTTGCTCGACCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAACCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTAGAGCCAAGCGTAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGCTACTTTAGATTTTTAAGATATGACCCTTATGCTGTGTATACATCATTCTGCTCTACAATTAAGATCCCTATCAGCAAAAGTCCATCAAAGGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCTGTTGAGTTGAAAAAAGTGGAATTTTCACAGGAAGAGCGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTTAACATTTTGTTGATGCTTTTGCGTCTTAGACAAGCATGTGATCATCCTCTCCTTGTCAAACGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCGAAGAAGCTTACTGAGGAAAAGCGGTTATCTCTTCTAAATTGTTTAGAAGCTTCTTTGGCCCTCTGCGGCATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTTACTAGTGATGACAATCAGTGCCCTGCTACAAACTGTAAAATTCGACTAAGCATGTCTTCAGTTTTCTCCAAAGTCACGTTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATATGCCTGGTTACTCTGGTTGTGAAGTGGATGAATCTGAATTTTGTTCTCAGAGTCAGCCATACAACTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAAACCCCAGTGCTGTGCTTCCCAAAACAATTCTCTGCAGAGCAGTTTTGGGGAAAGTACTGATTGCCTTGTCACCGCATCTTGTTCTGACCAAAATAAATCCTTAAATGAATATCCTGAGAGTCAAAATGTGTTAGAGAAAAGCTCTAATAATTCAGTTGGTGGTGAGAAAGCTATAGTGTTTTCTCAGTGGACTAGGATGCTAGATTTACTCGAAGCATGTCTGAAGAATTCTTCGATCCAGTATAGAAGACTTGATGGAACAATGTCTGTCACTGCAAGGGATAAAGCTGTTAAAGATTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAGGCTATAGACAGAGCACATCGTATCGGACAGACTCGTCCAGTCACAGTCTTGCGGTTAACTGTTAGAGATACAGTTGAGGACCGTATTTTAGCTCTACAGCAAAAAAAGCGAAAAATGGTTGCATCTGCCTTTGGCGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGA 4029 0.4095 MGLRPASLFDSEIRHRRFSAMMADEGFGYSCFLDGDGDAADDDKFCIDLETVMSVLDEDTDPSESSPEDFSLKNISPGESGIHDNFLLQNGNSVLECVHENQGPSPQTFSSSNALAGGYRDHESDDFCFTERTGVSNCEVPAYIAGTRFPDPEVNSSNVAVCGDGLKLTMWKCENDSQIKHVGYGAKSEYASHDSINENMDAKFDNHEAYMKDSIGPSGKQENDSCTSYEMSFADADRSSHVATSTDSSICQGSNVPSDFSDYYPSFNIYQSMDDRPVVGNTSGCLFDGVYPNVWENERMMTNMKVTKMELFTDTSGGMHSIINGGISFQDTQYTYPDSKYASFFPGNALFEDSASVQHSTCASYVSLEGQSLNGKAERDEVFIPYQNCAHSDDAEFNVGQEMKQLSGAFPVVGSLGNDLFKCEDGVTFSTTEKPKYYQSAIDGAANYFPGNMGNLNLKPFDKSLYNVQPSIASGKRYNCVMSEEEGKTIEHRSIDSQLSKGSIDRSNVEDDYDVCIIEDMSHPAPISRSAELGNSLNTSQSFRGGYTHSHMVGGMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNKCNIAKKSELETLNLDADDDQLPESGVVKNESNMGQDLSSRNPNKNTNLLLHVKGRPSAGTLIVCPTSVLRQWDDELHNKVTDKAHLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDPAISSKKRKCPPSAKSKKKGLDGVMLESVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTEEKRLSLLNCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTSDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNMPGYSGCEVDESEFCSQSQPYNSSKIKAALEVLQSLSKPQCCASQNNSLQSSFGESTDCLVTASCSDQNKSLNEYPESQNVLEKSSNNSVGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00728 1342 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 607 875 IPR014001 -
Spst6g00728 1342 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 685 773 - -
Spst6g00728 1342 Pfam Helicase conserved C-terminal domain 1182 1284 IPR001650 -
Spst6g00728 1342 MobiDBLite consensus disorder prediction 768 801 - -
Spst6g00728 1342 SMART helicmild6 1201 1284 IPR001650 -
Spst6g00728 1342 Pfam Zinc finger, C3HC4 type (RING finger) 1029 1065 IPR018957 GO:0046872
Spst6g00728 1342 CDD DEXDc_SHPRH-like 592 913 - -
Spst6g00728 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1341 IPR027417 -
Spst6g00728 1342 CDD SF2_C_SNF 1186 1294 - -
Spst6g00728 1342 Gene3D - 928 1341 IPR027417 -
Spst6g00728 1342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1022 1080 IPR013083 -
Spst6g00728 1342 Gene3D - 687 774 IPR038718 -
Spst6g00728 1342 Pfam SNF2-related domain 612 990 IPR000330 GO:0005524|GO:0140658
Spst6g00728 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 577 913 IPR027417 -
Spst6g00728 1342 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1172 1337 IPR001650 -
Spst6g00728 1342 Gene3D - 793 926 IPR038718 -
Spst6g00728 1342 ProSiteProfiles Zinc finger RING-type profile. 1029 1068 IPR001841 -
Spst6g00728 1342 Gene3D - 562 655 IPR038718 -
Spst6g00728 1342 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 464 1341 - -
Spst6g00728 1342 SMART ultradead3 588 890 IPR014001 -
Spst6g00728 1342 MobiDBLite consensus disorder prediction 768 788 - -
Spst6g00728 1342 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 795 925 - -
Spst6g00728 1342 ProSitePatterns Zinc finger RING-type signature. 1044 1053 IPR017907 -
Spst6g00728 1342 SMART ring_2 1029 1067 IPR001841 -
Spst6g00728 1342 SUPERFAMILY RING/U-box 1026 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00728 Spst-Chr6 6568705 6577007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00728 490 1341 RAD5 or RAD16-like Gene Family AT1G61140 60.341 0.0 985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst6g00728 SNF2_N 7.7e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00728 - - gmx:100805307 2069.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00548 3 8962184 8970076 Spst6g00728 6 6568705 6577007 PCT