Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00704 ATGAACGACCTATTCTCAAGCTCCTTCAAAAAGTTCAGCGACCTGAACGATCAGTCTCACGTCATCGATGTGGAGACTGGGAAGGAAAGTGTCAACCTGGATAACTTCTTCAACGAGGTGGAGAATGTCAAGGAAGACATGAGATCAGTTGAGAAGTTGTATAGAAAATTGCAAGAGTCAAATGAAGAGAGCAAGATTGTGCATAATGCTAAGACCATGAAGGATCTTCGAGCCAAAATGGACCAAGATATTCAGCAGGTCCTCAAAAGCGTTAAGGTCATAAAAGGAAAGCTTGAATCTCTAGAGCGTTCAAATGCAGCCAACAGAAACCTTCCAGGCTGTGGTCCAGGTTCCTCCGCGGATCGAACAAGAACCTCGGTGGTTAGTGGCTTAGGTAAGAAACTGAAGGACATGATGGATGATTTTCAAGGGTTGAGAATCAGAATGCAGAATGAGTACAAGGAAACCGTGGAGCGCAGGTACTTCACCATAACAGGAGAGAAGGCTGATGAAGACACCATAGAGAACTTGATATCAAGTGGAGAAAGTGAGAGTTTTCTTCAGAAGGCGATTCAAGAACAAGGGAGGGGTCAGATAATGGACACCATATCCGAGATTCAAGAGAGACATGATGCTGTTAAGGACATAGAGAAGAGCTTGATTGAGCTGCATCAGGTGTTTTTGGACATGGCAGCTCTTGTAGAGTCTCAGGGTCAACAGTTGAATAACATCGAGAGTAATGTGGCACATGCAAGTTCCTTTGTGCGAAGAGGCACTGAGCAACTTCAGGAAGCCAGAGAGTATCAAAAGAGCTCAAGGCAGTGGACTTGTTATGCCATACTTCTTGGCATTGTACTTGTCATTGTGCTTCTGTTTCCTCTCTTAACATCACTTTTACCTCACTTGTTGTATTGA 915 0.4404 MNDLFSSSFKKFSDLNDQSHVIDVETGKESVNLDNFFNEVENVKEDMRSVEKLYRKLQESNEESKIVHNAKTMKDLRAKMDQDIQQVLKSVKVIKGKLESLERSNAANRNLPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRIRMQNEYKETVERRYFTITGEKADEDTIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKDIEKSLIELHQVFLDMAALVESQGQQLNNIESNVAHASSFVRRGTEQLQEAREYQKSSRQWTCYAILLGIVLVIVLLFPLLTSLLPHLLY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00704 304 Coils Coil 33 63 - -
Spst6g00704 304 SMART tSNARE_6 198 265 IPR000727 -
Spst6g00704 304 Gene3D - 30 162 - -
Spst6g00704 304 CDD SNARE_syntaxin1-like 202 264 - -
Spst6g00704 304 Gene3D - 193 295 - -
Spst6g00704 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Spst6g00704 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Spst6g00704 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Spst6g00704 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Spst6g00704 304 PANTHER SYNTAXIN 42 288 IPR045242 -
Spst6g00704 304 CDD SynN 33 190 IPR006011 GO:0016020
Spst6g00704 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Spst6g00704 304 FunFam Syntaxin 132 196 296 - -
Spst6g00704 304 Pfam SNARE domain 240 291 IPR000727 -
Spst6g00704 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00704 Spst-Chr6 6380684 6381598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00704 1 303 SNARE and Associated Proteins AT1G61290 75.908 1.24e-172 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00704 K08486 - gmx:100818999 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00527 3 8734072 8734989 Spst6g00704 6 6380684 6381598 PCT