Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00691 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGACCATGGACAGCTGAGGAGGATCAGAAACTCGTTGATTACATTCAGAAACATGGATATGGGAATTGGAGGACACTCCCGAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTTCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGGTTTTCATTTGAAGAGGAAGAGACAATAATTCAGCTACATAGCATTCTCGGCAACAAGTGGTCTGCGATTGCAGCTCGCTTACCAGGAAGGACAGACAACGAAATCAAAAACTATTGGAACACACACATTAGGAAAAGGCTTTTGAGGATGGGAATTGACCCTGTGACACACAGTCCTCGACTTGATCTATTGGATATCTCTTCCATTCTAAACGCATCTTTCTATGGTTCATCACAAATGTTCCTTGGCATGCATCAGTCTATGGTGAACCCTGAGCTTTTAAGGATGGCTTCTTCACTCTTTTCCTCCTCACAGCAACACAAAGACCTTGACATGTGTGTTCCGAAAGGTCAACAGAACCAGCTCTGCGAGCCACAAGTTCAGAATCATGCTCCACACCTTGTCCAAATTCAAGATCCAGTTCAAGAAGCGCCTGCATGCAGCACCATGCTCAGCACCCCTTGTGTTTCATTGCCTCTCTCTCAACCACAGTTGGTTGAGCCCCATAATGTGGACCCATATCCATCATCAAGTTTCACAGACTTCACTTACCAACAACATTCTCACGATGACCAGATAATAAGCGATTGGCACAAAGATGGGGTTGCTTTAAGCACTTTAACGGAGGACTGTATCCCTCAGTTATCAAGCTATAATTATTATAGTTATAGTGGTCAAAATCCCGTGTATCCTCCGTTGTCCGAACCTTCAACTTTCCATTCCAATAACAGCATTCAGAACTTCAGCTTCGCTTCAGTTCTATCCACACCTTCCTCAAGCCCCACACGGTTGAATTCAAACTCCACGATAATCAACGGGAGCAACACAGAAGATGAGAGAGATCAAAGCTATGAAAGTAGCAACATGTTGAAATTTGAAATCCAAGATATTTTAGATGTGAATGAGTTCATGTAA 1122 0.4385 MGRAPCCDKNGLKKGPWTAEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSILNASFYGSSQMFLGMHQSMVNPELLRMASSLFSSSQQHKDLDMCVPKGQQNQLCEPQVQNHAPHLVQIQDPVQEAPACSTMLSTPCVSLPLSQPQLVEPHNVDPYPSSSFTDFTYQQHSHDDQIISDWHKDGVALSTLTEDCIPQLSSYNYYSYSGQNPVYPPLSEPSTFHSNNSIQNFSFASVLSTPSSSPTRLNSNSTIINGSNTEDERDQSYESSNMLKFEIQDILDVNEFM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00691 373 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst6g00691 373 CDD SANT 69 112 IPR001005 -
Spst6g00691 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst6g00691 373 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst6g00691 373 Gene3D - 13 66 - -
Spst6g00691 373 CDD SANT 16 61 IPR001005 -
Spst6g00691 373 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Spst6g00691 373 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst6g00691 373 MobiDBLite consensus disorder prediction 326 346 - -
Spst6g00691 373 SMART sant 13 63 IPR001005 -
Spst6g00691 373 SMART sant 66 114 IPR001005 -
Spst6g00691 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst6g00691 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 246 - -
Spst6g00691 373 FunFam MYB-related transcription factor 13 66 - -
Spst6g00691 373 FunFam Transcription factor MYB39 69 130 - -
Spst6g00691 373 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst6g00691 373 Gene3D - 69 116 - -
Spst6g00691 373 MobiDBLite consensus disorder prediction 326 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00691 Spst-Chr6 6230042 6231461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00691 1 373 MYB Transcription Factor Family AT4G21440 51.538 2.57e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g00691 Myb_DNA-binding 9.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00691 K09422 - gmx:778071 634.409