Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00689 ATGGGAAAACAATCGACGCCAGCGGATGAAGGAGAAGTGGTGCCGGAGCATCTGCGGTGCTGCCGGACGGATGGGCGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAACTCTGTGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAGAAGGTTCCGGAGTCGCTGAAGCTTCAGAGAAAGAGGCAAAACGATGCGGTTGAGACTCAGGTTGGAGCGAAGCGGAAAGCTAGAGAAGCATTGGTCAATAGGAGGAACCAACTGGAGCTCATAAGGATGGTTCTGCAGAGGGCGGTTGAAAAGAAGAAAAAGAAGAATGAATCGCAATTGAATTTGCCTTTGAATTTGAATTTGCATTCCAATCACGAGTTGAGGAAGGAATTACCAAACGGGGTTATGGCTATAGCTTCCGCTTCCACGCCCAATGTGGCTTCTTCTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGTTTCTGTTGGCAAGTTGCAGTGTGGACGAAACTTTAAGAAGGGAAGGAGTAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTGGCAGTCTTATAAGGTGTTCAAACTGCCAGAGAGAGTTCTTCTGCATGGACTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACTTGTAAAGATTGCTTGGCAAGTCAATATGAAGACAGTGAAAGTAAGGAACATTTGGCCGGTAAAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTAATGAAACAAATAAAAGAAGACCACCACATGGGTGTAGAAACAAAAGCGAAAGTTAAAGGAAAAAGAACGTCTGATATTATCATAAAACCGGTCAATCTTGGCTGCAATGAGAAAAATTACTGCAATTACTGCAAAACACCTATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTACGTTGTTCTCACGCATTAAGTCAAGGAAGTACCTCTGCAGAAGACAAGTCTTCTATATCCAAGCTACCTGACAAATTAAATGCCTGCATTTATAGCGGAAGATGCCTTTTGAATGACAAGGCTATTTCTAATGGAAATTTAACCGGTACTTCAATGTTAACAGAGTGGACAAGTTGTAATGGTGCTGCCATTGTATCATGCCCACTTACAAAACTTGGTGATTGTGGTAATAGCCACCTTGATCTGAACCATGTTTTCCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCGGAAGCTTTGGATAAAAGTTCAAGTTGCTCAATGTGTGTCGACAAAGATCATAAAACTTGCATATACAAGCAGTTACCGGAAGCGGCTCAAAGAGAAGATTCTAATGATAATTACTTGTATTATCCGACAGTTTTGGACATCGGGAGCAATCATTTGGAACACTTTCAGAAACACTGGGGAAGAGGCCATCCTGTAGTAGTACGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATTTTCTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAACGTTAGGCAGTATTTTACGGGGTCTCTTAAATGTCAACCAAAGAAAAATACTTGGGATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAGCACATTTTGATGAAATAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTTGTCCGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTGCAAAACATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCTGATTCCGTCACAAATCTCTGTTATGATTCATATGACATGGTTAATGTTATGGCACATACCATGGACATCCCTCTCTCCACAGATCAGCAATCTAGAATGAGTAAGTTATTGAAAAAACACAAAGCTCTTTGTCAAAAGGTGTCATGTAAAACTACTACTGAGCATACAGAAGACAGGGAACAAAATGAAATGCACAGTATGCTAAGTGAAGGAACTAACCTTTTAAGGAGAGTGAATAGAACATCTTACATCTCTAGTGAAGCCAAAACGATATCTAATCAGAACTTAGACACCAATATTTCCGGTCTTGAAGAATGTGGTCCCTATTCTAAAACTGAAAAGGCACAAGGCTCTTTATCTTTCCACAGGAAAGTTCTAAGCACTGAAATGTTTCCAGATCATAAACACAGAAATCCCTTTAAAAACTCAAACGGTGATAAAAGGAAGAAGACTACAGAGAATTCTGGTGCTCATTGGGATGTATTTCGAAGACAGGATGTGCCAAAGCTCTTAGAATACCTTAAAAGACACTCTGATGAATTTTTGTATACTAGTGAACATAACAAAAAGATGGTTCATCCAATTCTAGATCAGAGCTTTTTTCTTGATAATACTCACAAGACAAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCGTACCAGATAAGGAATCCTAAGTGTTGTGTTCATGTGGAATTGGAATTCGTATCCCCTGAGAATGTTGCTAAGTGTATTCAACTGATTGATGAGATCCGGCTGCTTCCAGAAGATCATCCCGCAAAAGGAGACAAATTGGAGTTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAGAACTTGA 2871 0.4061 MGKQSTPADEGEVVPEHLRCCRTDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKRQNDAVETQVGAKRKAREALVNRRNQLELIRMVLQRAVEKKKKKNESQLNLPLNLNLHSNHELRKELPNGVMAIASASTPNVASSSRYFRSKNVERVSVGKLQCGRNFKKGRSKKCHWCQRSDSGSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLASQYEDSESKEHLAGKSRVDRILHFHYLVCMLLPVMKQIKEDHHMGVETKAKVKGKRTSDIIIKPVNLGCNEKNYCNYCKTPILDLHKSCLSCSYSLCLRCSHALSQGSTSAEDKSSISKLPDKLNACIYSGRCLLNDKAISNGNLTGTSMLTEWTSCNGAAIVSCPLTKLGDCGNSHLDLNHVFPLSWIKEMEAKAEEIVCSYDFPEALDKSSSCSMCVDKDHKTCIYKQLPEAAQREDSNDNYLYYPTVLDIGSNHLEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFIFCTYLERSMTRYENNKDLLEACLDWFEVEINVRQYFTGSLKCQPKKNTWDEMLKLKGWLSSQLFKEQFPAHFDEIIDALPIQEYMNPLSGLLNLAANLPQGSAKHDIGPYVYISYGCADDEADSVTNLCYDSYDMVNVMAHTMDIPLSTDQQSRMSKLLKKHKALCQKVSCKTTTEHTEDREQNEMHSMLSEGTNLLRRVNRTSYISSEAKTISNQNLDTNISGLEECGPYSKTEKAQGSLSFHRKVLSTEMFPDHKHRNPFKNSNGDKRKKTTENSGAHWDVFRRQDVPKLLEYLKRHSDEFLYTSEHNKKMVHPILDQSFFLDNTHKTRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVAKCIQLIDEIRLLPEDHPAKGDKLELKKMALHSMSTAIKEIRELTCRT 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00689 956 Pfam JmjC domain, hydroxylase 805 902 IPR003347 -
Spst6g00689 956 SUPERFAMILY Clavaminate synthase-like 495 944 - -
Spst6g00689 956 Gene3D Cupin 488 927 - -
Spst6g00689 956 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 954 IPR045109 GO:0032454|GO:0033169
Spst6g00689 956 MobiDBLite consensus disorder prediction 783 807 - -
Spst6g00689 956 Pfam WRC 15 56 IPR014977 -
Spst6g00689 956 SMART cupin_9 596 919 IPR003347 -
Spst6g00689 956 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Spst6g00689 956 ProSiteProfiles Zinc finger RING-type profile. 182 228 IPR001841 -
Spst6g00689 956 ProSiteProfiles JmjC domain profile. 615 919 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00689 Spst-Chr6 6205385 6211132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00689 11 54 GRF Transcription Factor Family AT2G22840 47.727 6.32e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst6g00689 JmjC 4.1e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00689 K15601 - gmx:100802129 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00504 3 8475593 8481323 Spst6g00689 6 6205385 6211132 PCT