Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00682 ATGGTTGAGATGAGGAAGTGTCATCTCTGTAACAGTCCTGCAAAGGTGTTGTGTGAATCAGATCAAGCCAACCTCTGTTGGGAATGCGATGCTAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCCTAGGATTCTTCTCTGCCATGTTTGTCAATCGCTAACGGCTTGGCACGGAACTGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACCTGTGTTCACAACAATAGTGAGAGCTGCAGCCAACAAAATCATGATGAAGATGATGATGACCATGATGATCATGATGAAGATGATGATGATACGATGGAGGATCATGTAGAAAACGAAGAGGGTGGTGTGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCTCCACCCCCAGCTTCCACTTCTTCAAAGAGTGTTGCAACTAGTTCTACCAGGTTCTCCAATGTTGAAGAGGGTGCCTCGGATTAA 483 0.4555 MVEMRKCHLCNSPAKVLCESDQANLCWECDAKVHSANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTISVCNTCVHNNSESCSQQNHDEDDDDHDDHDEDDDDTMEDHVENEEGGVEEDDEENQVVPWTSTPPPPASTSSKSVATSSTRFSNVEEGASD 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00682 160 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270
Spst6g00682 160 MobiDBLite consensus disorder prediction 81 160 - -
Spst6g00682 160 SMART bboxneu5 2 48 IPR000315 GO:0008270
Spst6g00682 160 MobiDBLite consensus disorder prediction 92 125 - -
Spst6g00682 160 CDD Bbox1_BBX-like 6 48 - -
Spst6g00682 160 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 149 - -
Spst6g00682 160 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00682 Spst-Chr6 6157249 6157731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00682 5 109 C2C2-CO-like Transcription Factor Family AT4G27310 46.789 8.32e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst6g00682 zf-B_box 4.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00682 - - gmx:100805832 228.409