Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00674 ATGCCAGGTTTCTTATTCTTCCTCTTTTGTTTCTTGGCATCACTAGTCACAATATCATTCTCCTCAGACATCTTAACCTCAACACAAACTCTTCTAACCAACCAAACCCTCGTATCACCAAGCCAGGTCTTCGCTCTGGGCTTCTTTTCCAAGACCAATTCGTCTTGGTACTTAGGCATATGGTACCACAACATCAGCGACGGAACTGTAGTATGGGTGGCCAACAGAGACAACCCTCTCCACAACTCCACAGGATTTCTAACCATCGGAGAAAACAAAAACATGGTTCTAACAACTCCATCAGGGGACCCCGTTTGGTCCTCCAATATCACCAAAGCCAACAACCCCGTTCTTCAGCTTTTGGACACAGGAAACCTAGTTCTCAGAGAAGCAGACGTAACTGATCCCACAAACTATCTCTGGCAAAGCTTCGATTATCCAACGGACACACTCTTACCTGGGATGAAAATGGGGTGGAACCTAGATACTGGAGTGGAAAAACACTTAACCTCGTGGATAAACACAGGGCAAGACCCTTCAAGTGGAGATTACTCTTTCAAGATAGATCCTCGTGGGATACCAGAAATTTTCTTGAGGTACCAAGATAAAAAGGAAATGTATAGAAGTGGGCCTTGGAACGGTGAGAGATTCAGTGGAGTACCAGAGATGCAACCTGACACTGATTCTATCATGTTTAATTTTTCATATGATAACCATGGTGTGCACTATTCCTTCTCCATTGGCAACCGTTCTATTTTATCGAGGCTAGTTGTCACTTCGAGTGGTCAACTTCAGCGTCGTACATGGGTGCCAAGCAGCAACACATGGACCACGTTTTGGTATGCACCTAAGGATCAGTGTGATGGTTACAGAGCGTGTGGTTCTTATGGTTTATGTGACTCTAACGCCTCGCCGGTTTGCACCTGTATGAGAGGGTTCAGGCCAAGAAACCAGCAAGCGTGGAATTTGAGAGATGGGTCTGATGGGTGTGTGAGAAACACGGACTTGGATTGTGGGACTGACAAGTTTTTGCATGTGGAGGACGTGAAATTGCCGGAGACAAGTACTGTGTTTGCTAACAGGAGCATGAACCTACAAGAGTGTGAAGCTTTGTGTCGCATGAATTGTTCTTGCACTGCTTATTCCAACATTGAGATCACAAACGGAGGAACCGGCTGCATGACGTGGAGTGGTGAACTCATAGACATGAGACTGTATCCAAAGGGTGGACAAGATCTCTTTGTCAGATTAGCAGCTTCTGATGCAGATGACACAAGATCTGCAGATGGCTCTCACAAGACAAACCATACTGGCGAGATTGTAGGAATTACAATTTCTGCAGCTGTAGTAATTTTGGGATTGGTTGTGATTTTCTTCAAGAGGATGAAAGTGTTAAGTATATCGAATGTGAAGACTGCCCCTAGAGTTTCTTTCCAAAGAAGTAGAGAATTGCTTACAAGTGACGGGTTATTTTCAACTAATAGAGAGAACTCGGGAGAAAGGAACATGGATGACATTGAGTTGCCAATGTTTGATTTTAATACCTTAACAATGGCCACAGACAACTTCTCTGAAGCGAATAAACTTGGACAAGGAGGGTTTGGTATTGTTTACAGGGGAAGGTTGATGGAAGGGCATGATATTGCTGTCAAGAGGTTATCAAAAAACTCCGTGCAAGGAGTTGAAGAATTTAAGAATGAGGTCAAGTTAATTGTCAGGCTTCAACATAGAAATCTTGTTCGGCTCTTTGGATGCTGCATTGAGATGGATGAGAAGTTGCTAGTGTATGAGTACATGGAAAATAGAAGCCTTTATTCCATTTTGTTTG 1828 0.4365 MPGFLFFLFCFLASLVTISFSSDILTSTQTLLTNQTLVSPSQVFALGFFSKTNSSWYLGIWYHNISDGTVVWVANRDNPLHNSTGFLTIGENKNMVLTTPSGDPVWSSNITKANNPVLQLLDTGNLVLREADVTDPTNYLWQSFDYPTDTLLPGMKMGWNLDTGVEKHLTSWINTGQDPSSGDYSFKIDPRGIPEIFLRYQDKKEMYRSGPWNGERFSGVPEMQPDTDSIMFNFSYDNHGVHYSFSIGNRSILSRLVVTSSGQLQRRTWVPSSNTWTTFWYAPKDQCDGYRACGSYGLCDSNASPVCTCMRGFRPRNQQAWNLRDGSDGCVRNTDLDCGTDKFLHVEDVKLPETSTVFANRSMNLQECEALCRMNCSCTAYSNIEITNGGTGCMTWSGELIDMRLYPKGGQDLFVRLAASDADDTRSADGSHKTNHTGEIVGITISAAVVILGLVVIFFKRMKVLSISNVKTAPRVSFQRSRELLTSDGLFSTNRENSGERNMDDIELPMFDFNTLTMATDNFSEANKLGQGGFGIVYRGRLMEGHDIAVKRLSKNSVQGVEEFKNEVKLIVRLQHRNLVRLFGCCIEMDEKLLVYEYMENRSLYSILF 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00674 609 SMART ntp_6 338 417 IPR003609 -
Spst6g00674 609 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Spst6g00674 609 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Spst6g00674 609 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 213 IPR036426 -
Spst6g00674 609 Pfam D-mannose binding lectin 69 172 IPR001480 -
Spst6g00674 609 ProSiteProfiles Protein kinase domain profile. 523 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00674 609 CDD PAN_AP_plant 334 418 - -
Spst6g00674 609 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Spst6g00674 609 Pfam Protein tyrosine and serine/threonine kinase 526 608 IPR001245 GO:0004672|GO:0006468
Spst6g00674 609 Pfam PAN-like domain 338 403 IPR003609 -
Spst6g00674 609 CDD B_lectin 28 147 IPR001480 -
Spst6g00674 609 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Spst6g00674 609 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 490 598 - -
Spst6g00674 609 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 144 - -
Spst6g00674 609 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 607 - -
Spst6g00674 609 Gene3D Phosphorylase Kinase; domain 1 497 598 - -
Spst6g00674 609 SMART blect_4 28 147 IPR001480 -
Spst6g00674 609 SUPERFAMILY Protein kinase-like (PK-like) 500 608 IPR011009 -
Spst6g00674 609 Gene3D - 17 144 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00674 Spst-Chr6 6081117 6085182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00674 419 609 Receptor kinase-like Gene Family AT4G23190 39.691 3.31e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst6g00674 S_locus_glycop 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00674 - - gmx:100797331 1025