Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00665 ATGAATAGGAAGAGGAACTGTGATGATGACACAAGAGAGTTCAAATCAAAAAATCTTGAGGTTGAAAGGAGAAGGAGGGAGAAGCTCAGTAGGAGGCTTTTGATGCTGCGGTCTATAAATCCTATCATCACAAATATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATTGAGAAGCTGCAAGACGAAGTCCAAAGTCTCAGCCAACAGCTTCACCAAATGGAAACAACTTCAGAGGAAACAGCTGAGGCAAAAATAGATGAAGTTGAGGCTGTGGAAAATATGAAGAATTGGGGGATACAGGCAGAGGTCAGTGTGGCACAAATAGATGAGAATAAACTCTGGGTCAAGATCATCATTGAAAATAAGAGAGGAGGTTTCAGCAAATTGATACAGACACTCAACTACTTTGGCATTGAACTCATAGACACTCATCTTACAACCATAAAAGGAGCATTTCTCATTACAAGCTGCATACAGGGCAAAGATGGAGAAAGACTTGAAATTAATCAAACCAAGAATTTGTTAAAAGACATTATCAATGACATGTAG 558 0.3871 MNRKRNCDDDTREFKSKNLEVERRRREKLSRRLLMLRSINPIITNMNRGTIIVDAITYIEKLQDEVQSLSQQLHQMETTSEETAEAKIDEVEAVENMKNWGIQAEVSVAQIDENKLWVKIIIENKRGGFSKLIQTLNYFGIELIDTHLTTIKGAFLITSCIQGKDGERLEINQTKNLLKDIINDM 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00665 185 Coils Coil 52 79 - -
Spst6g00665 185 Gene3D - 5 79 IPR036638 GO:0046983
Spst6g00665 185 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 179 - -
Spst6g00665 185 SMART finulus 19 68 IPR011598 GO:0046983
Spst6g00665 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 62 IPR011598 GO:0046983
Spst6g00665 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 78 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00665 Spst-Chr6 6010791 6011759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00665 1 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 41.969 1.51e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00665 - - gmx:100793637 281.952