Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00664 ATGGAGTATGAAGATGAGGATTGGTTGTGTGTTACTATGGAAGAGTTTTCTCTTGCCACTGAAAATGGTTGTAGCAGGCAAGGGATGGGTAAGAAGAGGAACTATGATGATGACACAAGAGAGTTCAAATCAAAGAATCTTGAGACTGAAAGGAGGAGGAGGGAGAAACTCAGTAGCAGACTTTTGATGCTGCGTGCTATAGTGCCTATCATCACTAATATGAATAAAGCCACAATTATTGACGACGCTATCACCTATATTGAGAAACTTCAAGACAAAGTGCAGAGTCTAAGCCAAGAGCTTCACCAAATGGAAGCAACTTCAGATGAAACAGCAGACACAAAAATAGATGATATTGATTCTGCAGAAGATATGAAAAATTTGGGAATACAGGAAGAGGTTAGTGTGGCACAAATAGACGGGAATAAACTCTGGATTAAGATAATCATTGAGAAGAGGAGAGGGAGGTTCAGCAAATTGATGGAGGCTCTGGATAATTTTGGCATTGAACTCATAGACACCAACCTCACAACTACAAAAGGAGCCTTCCTCATTACAAGCTGCATACAGGACAAAGACGGTGAAAGACTTGAAATTCAACAAACCAAGCATTTGTTGCAAGATATTATCAATGACAAATAA 642 0.3941 MEYEDEDWLCVTMEEFSLATENGCSRQGMGKKRNYDDDTREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIDDAITYIEKLQDKVQSLSQELHQMEATSDETADTKIDDIDSAEDMKNLGIQEEVSVAQIDGNKLWIKIIIEKRRGRFSKLMEALDNFGIELIDTNLTTTKGAFLITSCIQDKDGERLEIQQTKHLLQDIINDK 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00664 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Spst6g00664 213 Coils Coil 80 107 - -
Spst6g00664 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 107 IPR036638 GO:0046983
Spst6g00664 213 ProSiteProfiles ACT domain profile. 145 213 IPR002912 -
Spst6g00664 213 Gene3D - 32 107 IPR036638 GO:0046983
Spst6g00664 213 Pfam Helix-loop-helix DNA-binding domain 45 91 IPR011598 GO:0046983
Spst6g00664 213 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 27 207 - -
Spst6g00664 213 SMART finulus 47 96 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00664 Spst-Chr6 6007686 6008768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00664 26 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.041 7.28e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g00664 HLH 6.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00664 - - vum:124819567 355.91