Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00638 ATGTTCGCCGGAGGAATTTCCTGGTACGGCTCGCCGCCCATTATTCCCATTACTACTCTGTTATTCCTCTGTCTTGTTGCGTCCTCCCTCTCAGATGAACTTCAACCACTCATGAATTTCAAGTCCTCTGTACAAAGTTCAAATGCAAGTGTTTTTAGTTCATGGGCACAAGCAAGTTCTCCCTGCCAATTCACTGGGATTGTATGCAATTCTAAAGGTTTTGTTTCAGAAATCAATCTTCCGCAGAAACAGCTGGGTGGTACTGTTCCTTTTGATTCACTTTGCGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCCAACAACTTGCACGGCAGCATCAATGAGGGGTTGAGGAAGTGCACCAACTTGAAGCACTTGGATTTGGGTGTGAATTCATTCAATGGAGCAGTGCCTGATTTGTCGAGTTTGCACAACTTGGAGTTCTTGAACTTAAACTCCAGTGGAATTTCTGGGGTATTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTGAGTTCCTCAGTCTCGGGGATAACCTGTTGAAGGAAAATCCTTTCCCTTTGGAGGTGTTAAAGCTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCATCGGGGATTGGGAATCTCACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCATTTGTCTGGTGAGATTCCGGCTGATATAGTAAAGCTTCAGAGGCTGTGGCAGCTTGAGTTATATGATAACTATCTGAGCGGGAAAATCCCAGTTGGATTTGGCAACCTTACTAGTCTTGTTAACTTTGATGCTTCTTATAATCAGCTTGAAGGTGATCTTTCGGAGGTAAGTTCCTTGACAAACCTTGCATCCCTTCACCTTTTTGGGAACAAGTTGTCAGGAGAAATTCCAATGGAGCTTGGAGATCTCAAGAACCTCACAGAGCTTTCTCTTTATGCTAACAATCTCACTGGTCCTCTTCCTCAAAAGCTTGGCTCTTGGGTAGGCATGCAATACGTTGATGTTTCAGACAATTTTCTTTCTGGCCCTATACCACCTCACCTGTGCAAGAACAATCAAATCAATGAACTAGCACTGTTGAACAACAGCTTCAATGGGACTCTACCAGAAACGTATGCAAAATGCACATCTTTGGCTCGTTTTCGCCTGAGCAGGAACTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGGAGCTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTGGCTCAACTGTTGTTATCTAACAATAAGTTCTCAGGTGAGTTACCATTGGAAATCTCAGAAGCTTCTTCATTGGTGTCAATTCAGCTAAGTTCAAATCAAATTTCTGGTCACATCCCAGAAACCATTGGCAAGTTGAAGAAACTAACCAGTCTTACTTTGAATGGGAACAATCTTTCTGGTGTTGTACCAGATTCCATTGGTTCTTGTACTTCTCTTAATGAAATAAACCTTGCCGGTAACTTTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCTCTTCCAACTCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGAAATTCCATCTAGTTTATCATCTCTGAGACTTAGCCTTCTTGACTTATCAAACAATCAGTTGTCTGGTTCCATACCAGAACCAATAGCCATTTCAGCCTTCAAAGATGGGTTCATGGGAAACCCTGGCCTATGCAGCCAGAGTCTGAAAGGTTTCAGACCATGTTCAATGCAATCTAGAAACTCCAGGAGACTCAAAAACCTTTTAGTCTGTTTCATTGCTGCTGTAATGGTTCTGCTTGGGGCATGTTTCCTCTTCACAAAACTAAGGCAGAACAAGTTTGAGAAGCCACTGAAGACTACTTCCTGGGATGTCAAGCAGTACCGCGTGTTGAACTTCAATGAGAATGAAATCGTTAATGGGATCAAGGCTGAGAATTTGATTGGTAAGGGAGGATCTGGGAATGTTTATCGGGTTGTGCTTAAAAGTGGGGCAGAATTTGCTGTGAAACATATATGGACTTCAAATCTAAGTGAGAGAGGAAGCTGCAGGAGCACCTCCGCTATGCTTAGGAGGAGTTCAAGGTCACCAGAATTTGATGCAGAGGTGGCCACTCTTAGCTCTATTAGGCATGTCAATGTTGTGAAGCTCTACTGTAGCATCACAAGTGAAGATAGCAGTTTGCTTGTTTATGAGTTTTTACCAAATGGGAGCTTGTGGGACAGGTTGCACACCTCTAAGAAGAAGTCTGAGATAGGTTGGGAGGTTAGGTATGATATTGCATTGGGTGCTGCTAGAGGATTGGAGTACCTGCATCATGGGTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGTAACATATTGCTGGATGAGGAATGGAAGCCACGGATTGCTGATTTTGGCCTTGCCAAGATTCTGAATGGAGGAGCAGGTAATTGGACCAATGTCATTGCTGGAACACTAGGATACATTCCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAGAAGAGTGATGTTTACAGCTTTGGAGTAGTCCTGATGGAGTTGGTAACAGGGAAGAGGCCAATGGAGCCAGAGTTTGGGGAGACTCATGACATTGTGCATTGGGTATGCAACACTATTAGGAGCAGAGAAGAGACTCTTGAATTGGTGGATCCTACCATTGCAAAGCATTTCAAAGAGGATGCCATGAAGGTACTGAGAATTGCAATACTATGCACTGGCAAAATTCCAGCTTCAAGACCGTCGATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGATCCATGTAAGACACCCAAGATGATTGTCACCATTGATGCTTAA 2907 0.4327 MFAGGISWYGSPPIIPITTLLFLCLVASSLSDELQPLMNFKSSVQSSNASVFSSWAQASSPCQFTGIVCNSKGFVSEINLPQKQLGGTVPFDSLCELQSLEKISLGSNNLHGSINEGLRKCTNLKHLDLGVNSFNGAVPDLSSLHNLEFLNLNSSGISGVFPWKSLGNLTSLEFLSLGDNLLKENPFPLEVLKLEKLYWLYLTNCSITGNIPSGIGNLTQLQNLELSDNHLSGEIPADIVKLQRLWQLELYDNYLSGKIPVGFGNLTSLVNFDASYNQLEGDLSEVSSLTNLASLHLFGNKLSGEIPMELGDLKNLTELSLYANNLTGPLPQKLGSWVGMQYVDVSDNFLSGPIPPHLCKNNQINELALLNNSFNGTLPETYAKCTSLARFRLSRNSLSGVVPSGIWGLPNLELFDLAMNQFEGPVTSDIAKAKSLAQLLLSNNKFSGELPLEISEASSLVSIQLSSNQISGHIPETIGKLKKLTSLTLNGNNLSGVVPDSIGSCTSLNEINLAGNFLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLSGSIPEPIAISAFKDGFMGNPGLCSQSLKGFRPCSMQSRNSRRLKNLLVCFIAAVMVLLGACFLFTKLRQNKFEKPLKTTSWDVKQYRVLNFNENEIVNGIKAENLIGKGGSGNVYRVVLKSGAEFAVKHIWTSNLSERGSCRSTSAMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTSKKKSEIGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILNGGAGNWTNVIAGTLGYIPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEPEFGETHDIVHWVCNTIRSREETLELVDPTIAKHFKEDAMKVLRIAILCTGKIPASRPSMRMLVQMLEEADPCKTPKMIVTIDA 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00638 968 Gene3D Phosphorylase Kinase; domain 1 649 757 - -
Spst6g00638 968 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524
Spst6g00638 968 SMART serkin_6 666 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00638 968 Gene3D Ribonuclease Inhibitor 189 286 IPR032675 -
Spst6g00638 968 ProSiteProfiles Protein kinase domain profile. 666 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00638 968 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Spst6g00638 968 FunFam Receptor-like protein kinase HAIKU2 649 757 - -
Spst6g00638 968 SUPERFAMILY L domain-like 306 615 - -
Spst6g00638 968 Pfam Leucine rich repeat 459 516 IPR001611 GO:0005515
Spst6g00638 968 SMART LRR_typ_2 529 553 IPR003591 -
Spst6g00638 968 SMART LRR_typ_2 97 121 IPR003591 -
Spst6g00638 968 SMART LRR_typ_2 481 504 IPR003591 -
Spst6g00638 968 SMART LRR_typ_2 313 337 IPR003591 -
Spst6g00638 968 SMART LRR_typ_2 218 242 IPR003591 -
Spst6g00638 968 SMART LRR_typ_2 169 189 IPR003591 -
Spst6g00638 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Spst6g00638 968 Pfam Protein kinase domain 669 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00638 968 CDD STKc_IRAK 672 953 - -
Spst6g00638 968 FunFam Probable inactive receptor kinase RLK902 30 188 - -
Spst6g00638 968 Gene3D Ribonuclease Inhibitor 29 188 IPR032675 -
Spst6g00638 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 215 953 - -
Spst6g00638 968 FunFam Receptor-like protein kinase HSL1 291 597 - -
Spst6g00638 968 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 758 965 - -
Spst6g00638 968 FunFam Leucine-rich receptor-like protein kinase family protein 189 285 - -
Spst6g00638 968 SUPERFAMILY RNI-like 77 399 - -
Spst6g00638 968 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Spst6g00638 968 SUPERFAMILY Protein kinase-like (PK-like) 652 952 IPR011009 -
Spst6g00638 968 Gene3D Ribonuclease Inhibitor 287 608 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00638 Spst-Chr6 5796753 5799933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00638 17 968 Receptor kinase-like Gene Family AT1G09970 56.920 0.0 1066
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst6g00638 Pkinase 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00638 - - gmx:100811489 1661.74