Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00636 ATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGTTAATGGAGGATCCTAACTTTCTCCATCAGTGGCAGTTAAACCATATTGATACAACTAGCTTAACAGGTTCTGTTTTTGGTGAGAGTTTGCTAAAGCACTCATTCTCTGGTAACACAAACTTCAACCCCAAAACATCCATCATGGAAACATCACCAACTGTAATTGAAAGACCAACAAAACAGCTTAGAAACAACAGCTGGAATAGCAAACACAGTCAACAGCAGACACCAGAGACACAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACTCAAATGAATTGGGACTAGTGAAACCTAAGGTGGAGATGGTGTGTCCTGAAATTGATAACAGTACTCTTGCAGAGATTTTGATCTCTCAAAACTTGGGGAATCAAAACTATCAGTTCAAGTCTAGCCAGGAGGCCAAAAAGATTGAACCACGTCCCAAATTTTCTCAACCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAGCTCAGCCAACGGTTCATTGCTCTATCTGCTCTCGTTCCTGACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAATCAAATACTTGAAACAAATGCAAGAGAAAGTGATTGCTCTTGAGGAGGAACAGAACAGGAAGAGAACTGTGGAATCTGTGGTAACTGTGAAGAAATCTCAGCTTTCTGATGATGCTGAAGACTCTTCTACTTCAGAAACTGGTGGTACATTAGACGAGGCACTACCTGAAATTGAAGCCAGATTTTGTGAAAGAAATGTCCTCATAAGAATACACTGTGAGAAGAATCAAGGAATCATAGAGAAAACAATCAGCGAAATTGAGAAACTCCATTTGAAAGTCACCAATAGCAGTGCCATGTCATTTGGAAGTTTCATCCTTGATATAACCATTATTGCTCAGATGAATATGGAATTTTGCATGACAGTGAAGGATCTTGTGAGAAGCTTACGCTCAACTTTTTCACATTAG 1026 0.3977 MEISSIRGLPELGLMEDPNFLHQWQLNHIDTTSLTGSVFGESLLKHSFSGNTNFNPKTSIMETSPTVIERPTKQLRNNSWNSKHSQQQTPETQYASCSNLLSFVNSNYSNELGLVKPKVEMVCPEIDNSTLAEILISQNLGNQNYQFKSSQEAKKIEPRPKFSQPQDHIIAERKRREKLSQRFIALSALVPDLKKMDKASVLGEAIKYLKQMQEKVIALEEEQNRKRTVESVVTVKKSQLSDDAEDSSTSETGGTLDEALPEIEARFCERNVLIRIHCEKNQGIIEKTISEIEKLHLKVTNSSAMSFGSFILDITIIAQMNMEFCMTVKDLVRSLRSTFSH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00636 341 Gene3D - 157 228 IPR036638 GO:0046983
Spst6g00636 341 SMART finulus 169 218 IPR011598 GO:0046983
Spst6g00636 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Spst6g00636 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 228 IPR036638 GO:0046983
Spst6g00636 341 Coils Coil 202 229 - -
Spst6g00636 341 PANTHER BHLH TRANSCRIPTION FACTOR 34 339 - -
Spst6g00636 341 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00636 Spst-Chr6 5773245 5775189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00636 1 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.805 9.66e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst6g00636 HLH 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00636 - - gmx:100798018 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00636 6 5773245 5775189 Spst6g00636 6 5773245 5775189 ECH
Spst3g00456 3 7669634 7679789 Spst6g00636 6 5773245 5775189 PCT