Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00628 ATGGAGAATTATTCGTACCAATCATACCCTGATTCTGGCGACTCATCTCCACGCTCTAGAGAGATCGACTTCGACAACCCTCCTCCTCCATGGGACGAACAACAACAACAAAATTACAAGGTCAAGTTCATGTGCAGCTATGGCGGCAAGATCCACCCACGCTCCCACGACAACCAACTATCCTACGTCGGTGGCGACACCAAGATCCTCGCCGTCGACCGCTCCATCAAGTTTCCCGCCCTGCTCGCGAAACTCTCTGCCCTCTGCGACGCCGGGCCACAAGAGAGCAACGGCAACAGCCTGACCTTCAAGTACCAGCTCCCCGGCGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGGTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCAACGATACTCTTCCTTCTTCTCCTCCTGCTTCCACACCGCTCCAACCTGTGATCAAACCTAATAACGTGGATTTCCTCTTCGGTCTCGAGAAAGGCGCTGCTGGCGCTGTGGCGGCTCCGCCGCCTCAGATTCCGCCTGCGGCGGTCAAATTTCATGATCCGGTGCCGGAGCCCGTCGCGCCGCCTCCGGAGTACCAGTCGCGGCTGAATTTGAACCCTGTGGATAGGGTTTCGGCTTCGGATCCGAGCTCGATTCAGCGCCAGTTGCAGCAATTGCAAATTGCGGAGAGCGAGCAAGGCGTGTATCGGAGGAAGAGTGAGGAGAATTACTCCGCCGGTGATTATTACGTTCATAAGCTTCCTGAGAAGTTCCCTCCGACAAATTTTCAGGCCAGCGCGCCGGGTTATTGGCCGGAAAAGCAAGTTTCCGGAGAAGCCTATCCGCCGGCGGTGTCGGCTGCGTCCGGCGGAGGAGAAGCGCCGGTTTACATGATTCCCGCTCCTGGGACGTACTATCATGCGCCGGTGGTGCGGCCTCCGGCCACTCAGGGGTACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGCGAAGCGGCGGTGTACGGCGGCGTGACACAGCCTAAATCGGCGCCTCCGGCGAACCTGTCGCCAGCTCAGCAGGCGGTTAAGGCTCCCGCGTATACGGAAGGATTCGGTGTGGTTCGGTCAGGTGGGATAGTGGATAATACGGGTGCTCCGTATGCACAGGTGGCGTACGATAGTGCAAGTGGGAGACAGGTTTATTATACTGCACCGGCTGGTGTAGTGCACGCTCCTCCTTACCAAGGGGTTTTTCCACCGGTCACCGCTGATATGAGACAAACTCCGGTCACGTTGGGTCAAGATGTTAAAGTGTTAAACAAAGTTACTCAAGGTTCAGTGTGA 1377 0.5701 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGDTKILAVDRSIKFPALLAKLSALCDAGPQESNGNSLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRGSARPARMRLFLFLNDTLPSSPPASTPLQPVIKPNNVDFLFGLEKGAAGAVAAPPPQIPPAAVKFHDPVPEPVAPPPEYQSRLNLNPVDRVSASDPSSIQRQLQQLQIAESEQGVYRRKSEENYSAGDYYVHKLPEKFPPTNFQASAPGYWPEKQVSGEAYPPAVSAASGGGEAPVYMIPAPGTYYHAPVVRPPATQGYYAVQRMASDGYREAAVYGGVTQPKSAPPANLSPAQQAVKAPAYTEGFGVVRSGGIVDNTGAPYAQVAYDSASGRQVYYTAPAGVVHAPPYQGVFPPVTADMRQTPVTLGQDVKVLNKVTQGSV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00628 458 Gene3D - 61 152 - -
Spst6g00628 458 MobiDBLite consensus disorder prediction 1 15 - -
Spst6g00628 458 Pfam PB1 domain 56 149 IPR000270 GO:0005515
Spst6g00628 458 SUPERFAMILY CAD & PB1 domains 56 154 - -
Spst6g00628 458 PANTHER OS05G0427100 PROTEIN-RELATED 9 348 - -
Spst6g00628 458 SMART PB1_new 55 151 IPR000270 GO:0005515
Spst6g00628 458 MobiDBLite consensus disorder prediction 1 34 - -
Spst6g00628 458 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 60 151 - -
Spst6g00628 458 CDD PB1_UP2 44 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00628 Spst-Chr6 5687611 5688987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00628 39 149 MAP Kinase Kinase Kinase AT5G57610 46.847 3.92e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00628 - - var:108341806 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00628 6 5687611 5688987 Spst6g00628 6 5687611 5688987 ECH
Spst3g00446 3 7597438 7598856 Spst6g00628 6 5687611 5688987 PCT