Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00618 ATGACTTCAGAATATGCTCCTCAAACAACTTCCCTGGCTGGGGAGAACCCAACCATAACCGTCTCTGGTAAGGGCTCTCTCAAATCAACTTGTTACATTAGACTGCATAGAGTTGAAACTCATAACTACATGAGAGTCTTCCGGGTCCCATGGATTTTTGAATGTGTCAAACTACAAATGAGTGTTGAGTTGGTCACCACTGTCGACAAGGCCAAGACCAGCCCTTCTGTCAAAGGTGGTATCTGTGAAGGAACCCTAATATATATATTTCGACTGAAGATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGACAACTCCACCAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGGTTGCTGAAGAAAGCTAGAGAATTATCAATTCTCTGTGATGCTGAAGTTGGATTGATGGTGTTCTCCAGCACTGGCAAGCTTTATGACTACGCAAGCACAAGGTAA 465 0.443 MTSEYAPQTTSLAGENPTITVSGKGSLKSTCYIRLHRVETHNYMRVFRVPWIFECVKLQMSVELVTTVDKAKTSPSVKGGICEGTLIYIFRLKMGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTR 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00618 154 SMART madsneu2 94 153 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 PRINTS MADS domain signature 131 152 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 PRINTS MADS domain signature 116 131 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 PRINTS MADS domain signature 96 116 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 CDD MADS_MEF2_like 95 153 IPR033896 GO:0000977|GO:0045944
Spst6g00618 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 103 150 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 ProSitePatterns MADS-box domain signature. 96 150 IPR002100 GO:0003677|GO:0046983
Spst6g00618 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 94 153 - -
Spst6g00618 154 SUPERFAMILY SRF-like 95 153 IPR036879 GO:0003677|GO:0046983
Spst6g00618 154 Gene3D - 106 154 IPR036879 GO:0003677|GO:0046983
Spst6g00618 154 ProSiteProfiles MADS-box domain profile. 94 154 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00618 Spst-Chr6 5577075 5584143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00618 94 153 MADS-box Gene Family AT2G14210 88.333 1.17e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst6g00618 SRF-TF 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00618 K09264 - gmx:100808145 118.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00618 6 5577075 5584143 Spst6g00618 6 5577075 5584143 ECH
Spst3g00439 3 7490638 7493220 Spst6g00618 6 5577075 5584143 PCT