Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00613 ATGGCCACATACCAATACCATAACACTTTGTCTTTCTTGATCCCTCATGCAGATCCTTTACACTTGAGCTTTCAGCCGTTTCTCAACAAGGAAGGTACCTTGAAATTTGAAGATGGATCTGGTACAGACCTTGTGAGTGGTCAAAAAATGGCTGATTCAAATCATATATATGAGCATCCACTTGTGGCAGTGGAGTTTGACACCTTTTGGAATCAATATGACTATGTAGCTTCACCCAACCCAACCCAGACGCAGATGCAGACTCTGGGTTTGTTGGTGGCTCCTGTTCTTGGATTCTACCACAGGTTCCTCCGCTTCTCTCTCCGATTCCTTCTCCTCATGCTCATGGATATCCCTTCCACCTTCAACTTCCTCACCCAACTCACTGAACTCGGTTGCGGGTTTCTCCTCCTAGGTTATGTTTCACGCATCTTCAACCTCCTCGGACTCTTATTAATCTTCCTCTGTTGTCTCCGCTTTCTACGTTCTCCGCTCCTCTCCAAGGACGAGAAATCGTCCAGAGACGAGAATTTGAAGGAGGAAACAGAAAATAATAATATTAGTGGTAGTAATTGGAGGGAGGAGAATTTGGAGGACGAGGTGTTCGATATAATGTCGCTCAGGAGCCTAGTGAAGGCGGAGAGGCAGCGGTTCAATGCGGCGTGTGCGGAGATTGAGAAGGAGCGGGGGGCAGCGGCGTCCGCGGCGGAGGAGGCGATGGCGATGATCCTGAGGCTGCAGAGCGAGAAGAGCGCGGTGGAGATTCAGGCGAAGCAGTTCCGGAGGGTGGTGGAGCAGAAGCAGGAGTACGATCTCGAAGTGATTGAGTCGCTCCAGTGGACGGTGGAGCAGGTGGAGTCGCAGAAGAACCTTCTCGAACGGCAGTTAGGGGTTTTGAGGGAGAGGCTGAGAGACTACATCAATGAATACGAGATTCAGAAGCAGCTTCAGGAACAGGATCAGGAACAGGTACAGGTGCAAGAATATGAACCAGAAAATGAACATGAAACTGAACAAGGCACAGCCAGCGATGTTGATTTTCATCCTGAAGATGGTGTTGGTCGTGATCGTGATGATGAAGTTGATCGTGTTCGTGATGATGATGTCGATAGTGGTAGCGGGTACTTGAATTTCTCTGTTGAATATGATGATGTAGATGCTGCTTCTTCACAATCTCCCTCTCCCTCACACACACCACAGCACTTTGTTGATGAAATAGCTACACAGGAATATAGGTTCAAAGTTGGTTCAGTCAGGAACTTCAAATTCACTGAGATCACAAGTCTGCTGTTCCAAGATATGAAGATGGAAACTCCATTGCTCCTACCATCTTGTCAGATGTCACTTTTGCAATGGAATGCTACAAGATATGGTAATGGGGCATCCATTTTTACAACTTCTAATGCAGCGGCAAGAAAATTCCAGACTGAGGTTGAGTTGGACGGGTTGGCATACATGTCCCAACCTCTGTTTCATTGCCCTTTATTTATTAGCTCCTGGCCATCTTTTGTTGGTGATTTCAACTTTGATGGCATAGCTGAAATTCAATTTTACACTAGATTAAGATGTTGTCAAACAATGGACTGA 1587 0.4663 MATYQYHNTLSFLIPHADPLHLSFQPFLNKEGTLKFEDGSGTDLVSGQKMADSNHIYEHPLVAVEFDTFWNQYDYVASPNPTQTQMQTLGLLVAPVLGFYHRFLRFSLRFLLLMLMDIPSTFNFLTQLTELGCGFLLLGYVSRIFNLLGLLLIFLCCLRFLRSPLLSKDEKSSRDENLKEETENNNISGSNWREENLEDEVFDIMSLRSLVKAERQRFNAACAEIEKERGAAASAAEEAMAMILRLQSEKSAVEIQAKQFRRVVEQKQEYDLEVIESLQWTVEQVESQKNLLERQLGVLRERLRDYINEYEIQKQLQEQDQEQVQVQEYEPENEHETEQGTASDVDFHPEDGVGRDRDDEVDRVRDDDVDSGSGYLNFSVEYDDVDAASSQSPSPSHTPQHFVDEIATQEYRFKVGSVRNFKFTEITSLLFQDMKMETPLLLPSCQMSLLQWNATRYGNGASIFTTSNAAARKFQTEVELDGLAYMSQPLFHCPLFISSWPSFVGDFNFDGIAEIQFYTRLRCCQTMD 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00613 528 ProSitePatterns Legume lectins beta-chain signature. 62 68 IPR019825 -
Spst6g00613 528 Pfam Zein-binding 206 296 IPR007656 -
Spst6g00613 528 MobiDBLite consensus disorder prediction 317 376 - -
Spst6g00613 528 Coils Coil 275 327 - -
Spst6g00613 528 MobiDBLite consensus disorder prediction 328 370 - -
Spst6g00613 528 PANTHER BNAANNG28530D PROTEIN 196 382 - -
Spst6g00613 528 ProSiteProfiles GTD-binding domain profile. 202 300 IPR007656 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00613 Spst-Chr6 5549367 5557845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00613 453 511 Aldehyde Dehydrogenase Gene Family AT2G14170 47.619 1.42e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00429 3 7396785 7398116 Spst6g00613 6 5549367 5557845 PCT