Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00600 ATGACAAGGACTAAGGTTAGGAAAATGGTGAGAAAGAAGATACCGATCAAGAAGATCGACGATGTAACTGCGAGGCAGGTGACATTCTCGAAGAGGAGGAGTGGTCTTTTCAAGAAGGCTCGTGAGCTTTCTCTTCTTTGTGATGCTGAGATTGCTCTCATAGTCTTTTCACCTGGTGGCAAACTCTTCGACTATGCTAGTTCAAGTATGCAGAAAATAATTGAAAGGCACATTTTACGGTCAGAGTTGAACCTTGACAAACTAAACCAGTCATATCCTACAGAGCAGGTTAAATTCGATTATGGTGATTTGAACAAGGAATTAGAAGACAGAACTCGTGAACTGAGACAACTGAGTGGAGAAGAATTGCAAGGATTGACCGTAAAGCAACTACAGAAAATAGAAGAAGGACTTGACTCATCCTTGAACCGTGTCTATAAAGCCAAGGTTGATGATTCCTCCTCTGATCACTTTTCTCTTCATCAGACCAAATTTTATATTTCTGTTCAGATTCTTTAA 519 0.4008 MTRTKVRKMVRKKIPIKKIDDVTARQVTFSKRRSGLFKKARELSLLCDAEIALIVFSPGGKLFDYASSSMQKIIERHILRSELNLDKLNQSYPTEQVKFDYGDLNKELEDRTRELRQLSGEELQGLTVKQLQKIEEGLDSSLNRVYKAKVDDSSSDHFSLHQTKFYISVQIL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00600 172 Coils Coil 101 121 - -
Spst6g00600 172 Gene3D - 22 91 IPR036879 GO:0003677|GO:0046983
Spst6g00600 172 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 147 - -
Spst6g00600 172 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 SUPERFAMILY SRF-like 11 94 IPR036879 GO:0003677|GO:0046983
Spst6g00600 172 ProSiteProfiles K-box domain profile. 94 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst6g00600 172 Pfam K-box region 94 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst6g00600 172 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Spst6g00600 172 CDD MADS_MEF2_like 11 77 IPR033896 GO:0000977|GO:0045944
Spst6g00600 172 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00600 Spst-Chr6 5406213 5409872 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00600 9 151 MADS-box Gene Family AT2G22540 53.741 1.03e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst6g00600 K-box 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00600 - - gsj:114374895 246.128