LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst6g00599	ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCTAGGCAGGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTCTGTGATGCTGAGATTGCTCTCATAGTCTTTTCCGCCACTAACAAGCTCTTCGAGTACGCTAGTTCAAGCATGCAACAAATACTTGAAAGGCATTCGCGGCATTCAGGTGCTCAAGGATTAGACATTTCATCTATTGGACAACAGCTTGGAAGTGATTCCTTTGACATGCTGCGCAAGGAAATAGAAGATAAGACTCATAACCTGAGTCAGTTGAATGGGGATGAGTTGCAAGGATTGACAATAGAGGAATTGCAGAAACTGGAGGAACTTCTTCAAAGACGTTGGACCACTATTTCAAAAATTAAGGATGAAAAAATTATACAAGAGATCAACAGCAGTAAAACAAAGGAAGCTGAACTTATGGAAGAGAACCAGAAATTGAAGCAGAGGTTGGCACGAGAACAAAGGCAATCACATGAGTCAATTACCTGCAGTTCATCTGATTTTTCTCCAGACATTGGTAGTTCTGACACATCTCTCAAGTTGGGGCTGCGTTTATTTGAATGA	621	0.4122	MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSATNKLFEYASSSMQQILERHSRHSGAQGLDISSIGQQLGSDSFDMLRKEIEDKTHNLSQLNGDELQGLTIEELQKLEELLQRRWTTISKIKDEKIIQEINSSKTKEAELMEENQKLKQRLAREQRQSHESITCSSSDFSPDIGSSDTSLKLGLRLFE	206

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst6g00599	206	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Spst6g00599	206	Gene3D	-	13	80	IPR036879	GO:0003677\|GO:0046983
	Spst6g00599	206	ProSiteProfiles	K-box domain profile.	85	175	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Spst6g00599	206	FunFam	Transcription factor, MADS-box	13	82	-	-
	Spst6g00599	206	Coils	Coil	148	175	-	-
	Spst6g00599	206	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	Coils	Coil	92	112	-	-
	Spst6g00599	206	Pfam	K-box region	91	169	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Spst6g00599	206	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	SUPERFAMILY	SRF-like	3	76	IPR036879	GO:0003677\|GO:0046983
	Spst6g00599	206	MobiDBLite	consensus disorder prediction	176	194	-	-
	Spst6g00599	206	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	MobiDBLite	consensus disorder prediction	169	194	-	-
	Spst6g00599	206	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Spst6g00599	206	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	163	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst6g00599	Spst-Chr6	5397438	5403709	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst6g00599	1	202	MADS-box Gene Family	AT2G22540	48.305	4.40e-57	179

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Spst6g00599		K-box	6.5e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst6g00599	-		-	gmx:100810422	321.627

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst3g00408	3	7160995	7166490	Spst6g00599	6	5397438	5403709	PCT