Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00573 ATGAGCTTTAGTCAGAAACTTGATAATCCAAACTGTTTAAAGCACCGAAAGAAACAAAATGGAACTGCCATTGTTATATTCACATTGGTCCTACAAGGGGAAACTCTTGAATTTTCAGCTCCTCAACAGCATGGCCTTCGAGTTTTTGGAATCATCTCATTATCCATTGTTGGACCAGCTATCATGTGTGCCATTGCGATTGCATGCTACGCGTCCTTCAAGTGCAGAAGAGGCAACAGAATTTCTGCAGCACAGAGGTCTACACCAACTGGAATGTCACTCGAACCTGCCATTGACAGGATGGGCCTGGATGAGTCTACCATCGAGTCTTATCAGAAACTGGTATTAGGAGAGAGCCGAAGAGTTCCAGGACCTAACGAGGGATGTTGCACCATATGCCTGTCAGAGTATAAAAGCAAAGACACAATAAGATGCATTCCTGAATGTGCTCATTGCTTCCATGCAGACTGCATAGATGAATGGCTTCGCATGAACACTACATGCCCTCTTTGCCGCAACTCTCCTTCACATCCTTCCACTGCTTGA 546 0.4487 MSFSQKLDNPNCLKHRKKQNGTAIVIFTLVLQGETLEFSAPQQHGLRVFGIISLSIVGPAIMCAIAIACYASFKCRRGNRISAAQRSTPTGMSLEPAIDRMGLDESTIESYQKLVLGESRRVPGPNEGCCTICLSEYKSKDTIRCIPECAHCFHADCIDEWLRMNTTCPLCRNSPSHPSTA 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00573 181 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 176 IPR046948 -
Spst6g00573 181 SUPERFAMILY RING/U-box 129 175 - -
Spst6g00573 181 SMART ring_2 130 171 IPR001841 -
Spst6g00573 181 CDD RING-H2_EL5-like 129 172 - -
Spst6g00573 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Spst6g00573 181 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Spst6g00573 181 Pfam Ring finger domain 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00573 Spst-Chr6 5223404 5224372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00573 6 176 C3H Transcription Factor Family AT2G25410 41.243 1.61e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00573 - - gmx:100799895 240.736