Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00572 ATGGAGCAGAACAGGAGCACCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTGTTATTCCCCTCTCCGATTCTCTACGCGAGTTCCATCAAGGATCGCCTCTTCGAACTCACCGGAATTCCCTCGCAGCACCAGCGCCTTGTCACCGGTTTCTGCCACCTCAACGACGACAAATCGGCGATCCAATGCTCCCCGGAGGACGGCAACATGTTCCCGTCCGTGCGGCTGTTGCTGCGGCTCAAGGGTGGCAAGGGAGGCTTCGGGTCGCTTCTTCGCGGGGCCGCGACGAAGGCCGGGCAGAAGAAAACCAACAATTTCGACGCGTGTCGGGACATGAGTGGTCGTAGGCTGAGGCATGTCAACGCCGAGAAGAGGTTGGAGGAGTGGAAGGCCGAAGAAGAGGAGAGAAGGCTCGAGAAGGTGGCGGATGAGTTTCTCAAGAAGCAGATGAAGAAGGGTAAGGGTAAGGGAAAGGCTGGAGGTGATGGTGAAGCTCATAAATACGTTGCGAAATATAGGGAGGAATCTGAACGTTGCGTTGCAGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCACTGCCAAGCGCAAGAGCCCTTCACAACCCCACCATGATGCCAAGAAGTTGAAGATATGGATGGGGAAGAGGAAATTGAATGAAAGTGATAGTGATTACAGTGATGAATCTGATGAAGAGGGGCAAATGGAATCAGATTTGTTGAATGAACAAAATGAGTCTGGGTTAGCTAAGGATGAGGGTAGTTCGGGTTCGGTGACTGGTGGAGGAGGCTCCTCTGATTCTTGCTCGTGTGAAAGTGGATCCGAGAAAGAGAAGGAAACTGTTGTACAAGGAAATGTGGAATCTGTTGGGTTGCTGAGCGATGAAAGTATCCAGGCCATGGATGAGCCTGTGATAAGCAATGGGGCTACTGCAATGCCAAATGAGTCAGCGGTTTCTGGACTTAATGCTGAAGAAGATGGACATCAGGATTGCCATGGCCATCTGTCTGACAAGTTTTATGGTGTTGTGAATCAGGCCTCAAATATTACAGGCTCTGAAACTGTGGCCAGTGCTGGGGAATCTAATGATATGGAAATTGATGGAACTCTTGATCATAAAGCAGCAGTCAATGAAGAGAGCTCAGCAAGCATTAGTGTTCCCGCAATAGAGGAGCCCCTTAATTTTGATGCCTTTAATAACTCTGCTGAACTCGAGGTTTTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGATAAAATGTGGAGGTACTTTACAGGAGCGGGCTGCCAGGCTTTTTCTTTTAAAATCGACTCCTCTGGATAAACTTCCAAAGAAGCTGCTTGCAAAGAAGTGTCAATTGTATCCTCCGGCTTGGGGAACTGACTGA 1410 0.4972 MEQNRSTKMYNLFVKHLDGKTLTLLFPSPILYASSIKDRLFELTGIPSQHQRLVTGFCHLNDDKSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAEEEERRLEKVADEFLKKQMKKGKGKGKAGGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDESDEEGQMESDLLNEQNESGLAKDEGSSGSVTGGGGSSDSCSCESGSEKEKETVVQGNVESVGLLSDESIQAMDEPVISNGATAMPNESAVSGLNAEEDGHQDCHGHLSDKFYGVVNQASNITGSETVASAGESNDMEIDGTLDHKAAVNEESSASISVPAIEEPLNFDAFNNSAELEVFGLERLKSELQSRGIKCGGTLQERAARLFLLKSTPLDKLPKKLLAKKCQLYPPAWGTD 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00572 469 MobiDBLite consensus disorder prediction 244 275 - -
Spst6g00572 469 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 157 IPR024974 -
Spst6g00572 469 Gene3D - 2 91 - -
Spst6g00572 469 MobiDBLite consensus disorder prediction 201 228 - -
Spst6g00572 469 SUPERFAMILY Ubiquitin-like 7 89 IPR029071 -
Spst6g00572 469 MobiDBLite consensus disorder prediction 198 300 - -
Spst6g00572 469 MobiDBLite consensus disorder prediction 229 243 - -
Spst6g00572 469 Coils Coil 125 157 - -
Spst6g00572 469 Pfam Replication stress response SDE2 C-terminal 386 457 IPR025086 -
Spst6g00572 469 PANTHER SPLICING FACTOR SF3A-RELATED 11 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00572 Spst-Chr6 5217113 5220289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00572 391 464 C2H2 Transcription Factor Family AT5G06160 43.243 1.27e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00572 K25059 - gmx:100799364 624.394