Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00564 ATGGAAGAGAGCACCAAAAGAAAACACACTAGCCTGATCCATGAACTTATCCAAGGAAAGGAGCTTACAAAGCAGCTCGGTAACCATCTGGTTTCTTCTTCTCCATCATCCTATGAAACCAATGAATTGTTGGTTGAGAAAATACTCTTGTCTTACGAGAAAGCACTCACCATTCTGAACTGGGGGTCTATTGCGGGAGAGGCCAAAACCACCAGTGGCACAAGGATGGATTCCCATTGTTCTATTACAAATGGTGGGGGTCCCAGAAGTGAGGTCGTGGACCGTGAATTTGAGCACAAATCTGTCTTCAAGAAAAGAAAGACCGTGCCTAGATGGACGGAGCAAGTGAAGATTTGCTCAAGAACAGGACTTGAGGGGTCTTTGGATGATGGATATAGCTGGAGAAAATACGGGCAGAAGGATATTCTTGGATCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGTACAAGGGTGTCTGGCAACAAAACAAGTTCAAAGGTCAGATGAAGACCCGACAACAATTGAGGTGACCTACAGAGGAAGGCATACATGCACGCAGGCTAAGCATTTGAACAAGGCATTCCCATCAAACATAAAGATGGGTTTGGGGGAAAATCAATTCCACAATGATCAAAATAATCAACCGCTTCAAGAGAAAATACAACAAACCCCAGAGGGGATTTCCACCTTTGAAACAGAGCTTAGAGTCAAGACCGAAGAATTGGAAATCAAGGAGGATATGTTTCCATGGTCTTCATTTCCATATCCATCAATTGGATCAGAAATGTTACCCGAGTCCATGATTGAAAACCATTTCATGGAAAGCTTTTCTCCTGTATTCATATCACCAGAAACTTCAGATTCCAACCCTTTCTGTTTGTCAGCGTACCACTTGGACAGCACTGAACTGTTATGCCAACACATACAAACCTTAGAATCTGATATCAGTGAGACAGTTTCAGCCTCAACTTCAGTGACAAACTCCCCAATCCTGGATTTGGACATTTTCCTTCATAAAGGGGATTTTGACACGGAGTTCCCTCTCAACACCCCTGAATTTTTCTCTCCATACGAACTTCCCTGCACTTCCACATAG 1107 0.43 MEESTKRKHTSLIHELIQGKELTKQLGNHLVSSSPSSYETNELLVEKILLSYEKALTILNWGSIAGEAKTTSGTRMDSHCSITNGGGPRSEVVDREFEHKSVFKKRKTVPRWTEQVKICSRTGLEGSLDDGYSWRKYGQKDILGSKFPRGYYRCTHRNVQGCLATKQVQRSDEDPTTIEVTYRGRHTCTQAKHLNKAFPSNIKMGLGENQFHNDQNNQPLQEKIQQTPEGISTFETELRVKTEELEIKEDMFPWSSFPYPSIGSEMLPESMIENHFMESFSPVFISPETSDSNPFCLSAYHLDSTELLCQHIQTLESDISETVSASTSVTNSPILDLDIFLHKGDFDTEFPLNTPEFFSPYELPCTST 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00564 368 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00564 368 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00564 368 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst6g00564 368 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 301 IPR044810 GO:0003700
Spst6g00564 368 FunFam WRKY transcription factor 53 114 191 - -
Spst6g00564 368 Gene3D WRKY domain 114 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst6g00564 368 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00564 Spst-Chr6 5165558 5167480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00564 16 199 WRKY Transcription Factor Family AT5G24110 47.568 1.30e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst6g00564 WRKY 3.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00564 - - gmx:100790050 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00564 6 5165558 5167480 Spst4g01947 4 60130676 60132693 PCT