Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00550 ATGGAACCCAGACTGAAGGAGGAGAAAGTTGTCACTTACATGCATGTCAAACATGGCGTTTTGAATGAAACACCAAAGGTAGTCCGGATTTCGTTGATGGATCCATATGCCACAGACGATGAAGATGAAGATGAAGATGAAGGATTGGTTAACCATCCTAGAATAAAGAAGATTGTGAATGAGATCAGAATTGTGGAGAAGAAGCCTCCAACCAGTGTGGCAGTGAAACAACTTCATAAGGAAAAAACAGAAGAACGTCTTAGAAAGAAGCTTAGAGGAGTTCGTCAAAGGCCATGGGGAAGATGGGCAGCAGAAATCAGAGATCCTGTCAAGCGAACAAGAGTCTGGTTAGGGACTTATGATACTGCTGAAGAAGCTGCCATGGTTTATGACAAAGCAGCTATTAGCTTTAGAGGCTCCAATGCTCTCACCAATTTCATAAGTCCTCCTCCTACAAGGGAAGACATTCACAGGGGTGCTGTACTTTTTGATTATGGTTATAATGAATCTCAAGATAGTGGGAGTGGTTTGGTTGAGAATGTGAGTGGTGGGAGTTATTCAAGTAAAGACTCTCATTTGCCTTCACCCACTTCTGTGCTCGGACATCAGCATGAGGAACTTACGTGGGAAGAAGTTTCAGAAACAGATGTTTTGGGTATAGAAGAACCAAGTTTGGAAGATAATTTCTTGTTTTTAGACTCGCATTCACCATCCTCTGATTGTTATTTCAATTTTGAAACTAATTTTCTCACTGAAACTAATGGAAAAGAGTCCGATTTCAGTGATATTTCCCATCTTGTCAATGAGGATTTTCAATCATGCAACTGGGATATAGATAGTTACTTCAATGATCCTTTTTCTGCTGAGAGATTGAATTGA 879 0.4039 MEPRLKEEKVVTYMHVKHGVLNETPKVVRISLMDPYATDDEDEDEDEGLVNHPRIKKIVNEIRIVEKKPPTSVAVKQLHKEKTEERLRKKLRGVRQRPWGRWAAEIRDPVKRTRVWLGTYDTAEEAAMVYDKAAISFRGSNALTNFISPPPTREDIHRGAVLFDYGYNESQDSGSGLVENVSGGSYSSKDSHLPSPTSVLGHQHEELTWEEVSETDVLGIEEPSLEDNFLFLDSHSPSSDCYFNFETNFLTETNGKESDFSDISHLVNEDFQSCNWDIDSYFNDPFSAERLN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00550 292 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Spst6g00550 292 CDD AP2 89 146 IPR001471 GO:0003700|GO:0006355
Spst6g00550 292 Gene3D AP2/ERF domain 89 148 IPR036955 GO:0003700|GO:0006355
Spst6g00550 292 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 223 - -
Spst6g00550 292 MobiDBLite consensus disorder prediction 174 200 - -
Spst6g00550 292 FunFam Ethylene-responsive transcription factor 2 89 148 - -
Spst6g00550 292 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Spst6g00550 292 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Spst6g00550 292 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Spst6g00550 292 SUPERFAMILY DNA-binding domain 90 146 IPR016177 GO:0003677
Spst6g00550 292 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00550 Spst-Chr6 5071833 5072711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00550 1 284 AP2-EREBP Transcription Factor Family AT2G46310 33.968 1.31e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst6g00550 AP2 4.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00550 - - ccaj:109796536 343.969