Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00544 ATGGGAAGCAAGGACGAAGAAAAATCTACCAAGACTGAAAAGCCTTCATCACCTGTAACAATGGATCAGGCTAATCAGACCAACCAGCCCAATATTCATGTATATCCTGATTGGGCAGCCATGCAGGCATATTATGGGCCAAGAGTCACCATGCCCCCATACTACAACTCGGCTGTGGCTTCTGGTCACGCTCCTCACCCATACATGTGGGGGCCACCACAGCCTATGATGCCACCTTATGGGCCTCATTATGCAGCAATTTATTCACATGGAGGGGTTTACCCTGCAGTTCCTATCGGGCCACATACTCATGGTCAAGGAGTTCTGTCTTCACCTGCTACTGGGACTCCTTTAAGCATAGAAACACCCCCCAAATCATCAGGAAATGCTGATCAGGGTTTAATGAAGAAATTGAAAGAGTTTGATGGACTTGCAATGTCAATTGGCAATGGCCATGCTGAAAGTGTTGAGCGTGGAGGTGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCCAGTGATGGAAGTGATGGCAACACTTCAGGGGCTAATCAAACAAGAAGGAAAAGAAGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTGATACTCAAAGCAGTCCCATTTCTAAAGAGACTGCAGCTTCCAATAAGATGGTGGCAATTGTCCCTGCCAGTGGTGCAGGAACAATAGTTGGGCCTGTAGTTTCTTCAGGTATGACCACCGTGCTGGAGCTGAGAAATCCTTCCAGTGTTCATTCTAAAGCAAATACCACAAATGCCCCACAACCTTGTTCAGTATTGCCTACAGAAGCTTGGTTACAGAATGAGCGTGAGCTGAAACGTGAGAGGCGGAAACAATCTAATCGAGAATCTGCTAGAAGGTCAAGACTAAGGAAACAGGCTGAAACTGAAGAACTGGCACGAAAAGTTGATTCCTTGAATGCTGAGAACGAGACACTGAAATCAGAAATAAATCGACTGACGGAAAGTTCTGAAAAAATGAGGGTGGAAAATGCAACATTAAGGGAAAAACTTAAAAATGCTCAACTTGGACAAACACAGGAGATAACTTTGAACATAATTGACAGCCAGAGGGCTACACCTGTCAGCACAGAAAACTTACTATCTAGAGTTAATAACAATTCCAGTTCTAGTGATAGAACCGTGGAGGATGAGAATGGCTTTCGTGAAAACAAACCAAACTCTGGTGCAAAGCTGCATCAACTTCTGGACACGAGTCCTAGAGCTGATGCTGTGGCAGCTGGTTGA 1281 0.4551 MGSKDEEKSTKTEKPSSPVTMDQANQTNQPNIHVYPDWAAMQAYYGPRVTMPPYYNSAVASGHAPHPYMWGPPQPMMPPYGPHYAAIYSHGGVYPAVPIGPHTHGQGVLSSPATGTPLSIETPPKSSGNADQGLMKKLKEFDGLAMSIGNGHAESVERGGENRLSQSVDTEGSSDGSDGNTSGANQTRRKRSREGTPTTDGEGKTDTQSSPISKETAASNKMVAIVPASGAGTIVGPVVSSGMTTVLELRNPSSVHSKANTTNAPQPCSVLPTEAWLQNERELKRERRKQSNRESARRSRLRKQAETEELARKVDSLNAENETLKSEINRLTESSEKMRVENATLREKLKNAQLGQTQEITLNIIDSQRATPVSTENLLSRVNNNSSSSDRTVEDENGFRENKPNSGAKLHQLLDTSPRADAVAAG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00544 426 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 282 345 IPR004827 GO:0003700|GO:0006355
Spst6g00544 426 MobiDBLite consensus disorder prediction 281 314 - -
Spst6g00544 426 MobiDBLite consensus disorder prediction 254 273 - -
Spst6g00544 426 Gene3D - 283 338 - -
Spst6g00544 426 SUPERFAMILY Leucine zipper domain 283 338 IPR046347 GO:0003700|GO:0006355
Spst6g00544 426 CDD bZIP_plant_GBF1 285 333 IPR045314 GO:0003700|GO:0006355
Spst6g00544 426 MobiDBLite consensus disorder prediction 380 426 - -
Spst6g00544 426 MobiDBLite consensus disorder prediction 14 33 - -
Spst6g00544 426 MobiDBLite consensus disorder prediction 153 216 - -
Spst6g00544 426 Coils Coil 300 348 - -
Spst6g00544 426 MobiDBLite consensus disorder prediction 107 129 - -
Spst6g00544 426 Pfam Disordered region downstream of MFMR 131 259 - -
Spst6g00544 426 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 395 IPR044827 GO:0003700|GO:0006355|GO:0043565
Spst6g00544 426 MobiDBLite consensus disorder prediction 1 33 - -
Spst6g00544 426 FunFam G-box binding factor 3 283 338 - -
Spst6g00544 426 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 287 302 IPR004827 GO:0003700|GO:0006355
Spst6g00544 426 MobiDBLite consensus disorder prediction 160 186 - -
Spst6g00544 426 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Spst6g00544 426 Pfam bZIP transcription factor 280 342 IPR004827 GO:0003700|GO:0006355
Spst6g00544 426 SMART brlzneu 280 344 IPR004827 GO:0003700|GO:0006355
Spst6g00544 426 MobiDBLite consensus disorder prediction 201 216 - -
Spst6g00544 426 MobiDBLite consensus disorder prediction 105 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00544 Spst-Chr6 5032983 5036978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00544 1 426 bZIP Transcription Factor Family AT2G46270 48.966 6.63e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst6g00544 MFMR_assoc 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00544 K09060 - gmx:100781875 738.413