Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00529 ATGAGGCGAAATGCAGGTTCATGTGTGCTGAAGTTCAATACAACCCAATATGTGGCATTTGATGAGTGCAGCGATGTGAAAGAGAATATATACTTGTGGGGTGAGGATGGGTTCCCGACCTCATTGTGCTGTCGAAATGCTCTCACGATTTTGTCCAATGCGTTGGCCTCACGAGCACTGAGCTCAGGAGGACAACTGTTCCTTTCCCAAGATCAATGGCAGAGTTGCTCTCCGCCATTTCACCCGCAACAAGGGATGTCACTTGATTCATGTGGTTTTGACAACTTGTACCGAGGCAGTTCCATATGCTCCAACTTCATTTTGCAGGATGTTATGAACCTGCAACAGTACCAAGACGCATTGAGCCAGTGCTCCCACTTCGACCAACGTTTTGATCAATCTTGTGCAGATTGCACCAGAGGAATATTGAGCGTGAGAGATGCTTTATATTATCAAGTGGGCAAAAACAATAACGACACTGACAGAGCCATATGCGGGGTAGCAACTATTGTTGCTCTTGCAGCTGGGAGACCAAACGATCCTCTCGTTGACAAATTCTTACGATGCTTGCAACCTTCAGCTTCAGGATCAGACAAGAGAGGATCTTTGTGGAAACCCTTGCTGAGTGTGCCAGTAGTTGTGGTTACAATATTGCTTGTGGTTATTATGGTCAAATGTTTGTCCAAGAAGAAGGGTCGTAGACAGGTTGATTTGAAAGAGATCACTGCGTGGTCTGGATTGTACTGGTTCTGCAAAAGGGAAATTGAAAATGCCATGAATTATAGTGGTCGAAAGATAAGCCTTGGACGTGGAAGTGCAGGGCAGGTATATAGAGGCGTTCTACCCAGTGGTCAAATCGTGGCCATCAAGCATTTAACAAAGAGTAACACCTCTGAGTCTTTCACCCGAGAAGTTGAAGGCCTTTCAAGGCTTCGCCATCCAAACCTGGTTTGCCTCTTTGGGTGTTGCATTGAAGGGGATGAGAGATATTTAGTCTATGAATTTTGTGCAAACGGGAATCTTGCTCAACATCTCTTACGAAGAGATAGTCACTTGACTTGGGAAACAAGAGTAAGAATTTTGAGAGATTGTTCATTTGCACTCAAGTACCTCCACCATCATATGGAAGGCTGTGTTGTCCATAGAGATATAAAGCTTACGAACATTCTTTTGACTGAGAGATACCAAGCCAAACTGTCGGATTTTGGACTGTCAAAGGTGATGGGAATCAAAGAGAGCAAGGTTTTTACCGATGTAAGAGGAACCATAGGCTACATGGATCCGGAGTACATGAGTAATGCCAAGCTAACATGTGCCAGTGATGTATACAGTTTTGGTATTGTTGCTCTACAAATATTGTCTGGACAGAAAGTCATAGAGTTGGATCTTGATGCCAGAGATCAGCTCACTAGGAAGGCAAGAGATGTGAGTATGGGAAAGCGTCCATTGTCTGATTTTGAAGACCCAAGGCTAAAAGGAAAGGTGGATAAGGCAGACTTTGAAGCCATCCTACAGATTGCAGTGTTGTGTGTTGCCAAATCAAGCAAAGGTCGACCAACCATTGAGGTTGTTTTTGAAGAACTGGACAAGGTCTGGACGGACACAGAAACCAGGATGGTTAATGATTTAGTTGTTGATTAA 1641 0.4412 MRRNAGSCVLKFNTTQYVAFDECSDVKENIYLWGEDGFPTSLCCRNALTILSNALASRALSSGGQLFLSQDQWQSCSPPFHPQQGMSLDSCGFDNLYRGSSICSNFILQDVMNLQQYQDALSQCSHFDQRFDQSCADCTRGILSVRDALYYQVGKNNNDTDRAICGVATIVALAAGRPNDPLVDKFLRCLQPSASGSDKRGSLWKPLLSVPVVVVTILLVVIMVKCLSKKKGRRQVDLKEITAWSGLYWFCKREIENAMNYSGRKISLGRGSAGQVYRGVLPSGQIVAIKHLTKSNTSESFTREVEGLSRLRHPNLVCLFGCCIEGDERYLVYEFCANGNLAQHLLRRDSHLTWETRVRILRDCSFALKYLHHHMEGCVVHRDIKLTNILLTERYQAKLSDFGLSKVMGIKESKVFTDVRGTIGYMDPEYMSNAKLTCASDVYSFGIVALQILSGQKVIELDLDARDQLTRKARDVSMGKRPLSDFEDPRLKGKVDKADFEAILQIAVLCVAKSSKGRPTIEVVFEELDKVWTDTETRMVNDLVVD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00529 546 FunFam probable receptor-like protein kinase At5g59700 336 544 - -
Spst6g00529 546 Pfam SPARK 4 160 IPR043891 -
Spst6g00529 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Spst6g00529 546 SMART serkin_6 262 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00529 546 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 55 534 - -
Spst6g00529 546 SUPERFAMILY Protein kinase-like (PK-like) 247 528 IPR011009 -
Spst6g00529 546 Gene3D Transferase(Phosphotransferase) domain 1 336 543 - -
Spst6g00529 546 Gene3D Phosphorylase Kinase; domain 1 223 335 - -
Spst6g00529 546 Pfam Protein kinase domain 267 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00529 546 ProSiteProfiles Protein kinase domain profile. 262 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00529 Spst-Chr6 4878407 4890671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00529 250 536 Receptor kinase-like Gene Family AT1G79680 39.796 3.22e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Spst6g00529 Pkinase 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00529 - - vum:124837890 918.687