Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00523 ATGGCGAAGAGGGAGCGAGTGAGAGGAGTGTCGGCGTCGGAGTTGAAGGAGAGGTTGAGGGAATTGGTGAAGGCTATTGTGGACTCCGACGACTACACGGTGGAAGCCGCGGACGAAGCTATCGCCACCCTTTCGGCTCTCAAACATTTGAAGTCTCCAAACTCTTTGGACGACTTTCGCCTTCCTCCCGAATTTCGATGCCCCATTTCAACCCAATTGATGACTGATCCCGTTATCTTATCCACCGGTCAGACTTATGATAGGCCATTCATTCAGAGGTGGTTGAATGAAGGCCACAGAACGTGCCCGCAGACCCAGCAGGTTCTGTCTCACTCAATTCTAACTCCTAATTACTTGGTCCGAGACATGATTGTGCAGTGGTGTAGGGACCGTGGAATTGAGCTTCCTAAGCCTGTTAAGGACATTGATGAAGTGGTTACTAATGCGGATAGGAACCATTTGAATTCGTTGCTTCGCAAGTTGTCGTTGTCTGTTTCTGATCAGAAACAAGCTGCCAAGGAGCTTCGCCTTTTGACAAAGCGAATGCCTTCGATTCGAGTCCTTGCTGGGGAGTCCAGTGATGTGATTCCCCAGTTGCTGAGTCCGTTATCATCGCCTGGCACGGCTTCTACTGACCCTGATCTCCATGAGGACTTGATCACCACGGTTCTCAATCTCTCTATCCACGATGATAACAAGAAGGCCTTTGCAGAGGATCCTGCAGTGATTTCTCTGCTTATTGATGCCTTGAAAAGTGGAACAATTCAAACCAGGAGCAATGCTGCCGCTGCTATTTTCACATTGTCCGCGCTTGATTCCAACAAACACATCATTGGAAAATCCGGGGCAATCAAGCATTTGCTCGAGCTTTTGGATGACGGACAGCCATTGGCCATGAAAGATGCTGCTTCGGCCATATTTAATCTTTGTCTTGCGCATGAGAATAAAGGGAGGACCGTGCGGGATGGAGCCGTTCGGGTTATTCTGAATAAGATGATGGAACACATTCTAGTTGATGAGTTGTTGGCTATATTGGCACTCCTATCTAGTCATCCCAAAGCTATTGAAGAAATGGGTGATCTAGATGCTGTTCCTTTATTATTGGGGATTATTAAGGAAAGTACATCGGAGAGGAGCAAGGAAAATTGTGTTGCAATTCTGTATACCATTTGTTTTAGTGATAGAACAAAGTTAAAGGAAATTAGAGAAGAAGAAAAAAACAATGGTACGCTATCAAAGCTTGCACAATGTGGAACTTCGAGGGCTAAAAGGAAGGCTAACGGTATTCTTGAGAGGCTTAATAGATCCCCCTCCTTAACACACACTGCTTAG 1332 0.4632 MAKRERVRGVSASELKERLRELVKAIVDSDDYTVEAADEAIATLSALKHLKSPNSLDDFRLPPEFRCPISTQLMTDPVILSTGQTYDRPFIQRWLNEGHRTCPQTQQVLSHSILTPNYLVRDMIVQWCRDRGIELPKPVKDIDEVVTNADRNHLNSLLRKLSLSVSDQKQAAKELRLLTKRMPSIRVLAGESSDVIPQLLSPLSSPGTASTDPDLHEDLITTVLNLSIHDDNKKAFAEDPAVISLLIDALKSGTIQTRSNAAAAIFTLSALDSNKHIIGKSGAIKHLLELLDDGQPLAMKDAASAIFNLCLAHENKGRTVRDGAVRVILNKMMEHILVDELLAILALLSSHPKAIEEMGDLDAVPLLLGIIKESTSERSKENCVAILYTICFSDRTKLKEIREEEKNNGTLSKLAQCGTSRAKRKANGILERLNRSPSLTHTA 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00523 443 CDD RING-Ubox_PUB 62 114 IPR045210 -
Spst6g00523 443 SUPERFAMILY ARM repeat 19 433 IPR016024 -
Spst6g00523 443 FunFam RING-type E3 ubiquitin transferase 60 134 - -
Spst6g00523 443 SMART arm_5 229 270 IPR000225 GO:0005515
Spst6g00523 443 SMART arm_5 351 392 IPR000225 GO:0005515
Spst6g00523 443 SMART arm_5 271 311 IPR000225 GO:0005515
Spst6g00523 443 Gene3D - 189 337 IPR011989 -
Spst6g00523 443 ProSiteProfiles U-box domain profile. 60 134 IPR003613 GO:0004842|GO:0016567
Spst6g00523 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 134 IPR013083 -
Spst6g00523 443 Gene3D - 338 438 IPR011989 -
Spst6g00523 443 PANTHER U BOX DOMAIN-CONTAINING 16 433 - -
Spst6g00523 443 SMART Ubox_2 64 127 IPR003613 GO:0004842|GO:0016567
Spst6g00523 443 FunFam RING-type E3 ubiquitin transferase 338 439 - -
Spst6g00523 443 SUPERFAMILY RING/U-box 50 138 - -
Spst6g00523 443 Pfam U-box domain 62 130 IPR003613 GO:0004842|GO:0016567
Spst6g00523 443 FunFam RING-type E3 ubiquitin transferase 191 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00523 Spst-Chr6 4847392 4848881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00523 123 443 U-box Gene Family AT3G07360 58.610 1.83e-122 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00523 - - gmx:100806619 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00523 6 4847392 4848881 Spst6g00523 6 4847392 4848881 ECH