Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00511 ATGATAAGCATCAGAGAAGGTCCTTTTGATTATGTGATGAATCTTCGATATGCCTCGGATCGCATATTTGCTCCTTATACTGTTTACAAGGGCAAAGCGGCATTCTCGTTGAATCCTTGTCTTCCAACTTTTACTAAGTTGGATTCCGGGACTATTGTAGTTGATCGACGTGGTTCAATGATGATGACTTTCATGCATTCTATTGGAGAGCGCAAATATGACTGGGAGAAGAGACAGAGATTTGCTCTCTCAGCCACTGAAGTTGGTTCTTTGATAGCCATGGGCTCTCAAGATTCCTCTGAATTCTTTCATGACCCTTCAATGCTATCAAGTAATGCTGGCCAAGTAAGGAAGAGCTTATCAATTAAGCCTAATGCAGGCAGTAATGGATACTTTGTATCATTGACTGTTGTCAACAACCTGTTAAACACCAAAGACTTCTTCAGTGTTCCTATCACAAATGCTGAGTTTGCTGTAATGAAGACAGCTTGCAGTTTTGCATTGCCACACATCATGGGTTGGAACCAGATAACTAATCAGCAATCCAGAGGCACAGTTGACCTTCAACCGAAGGGTGGCTCTCAAGTTTGA 591 0.4196 MISIREGPFDYVMNLRYASDRIFAPYTVYKGKAAFSLNPCLPTFTKLDSGTIVVDRRGSMMMTFMHSIGERKYDWEKRQRFALSATEVGSLIAMGSQDSSEFFHDPSMLSSNAGQVRKSLSIKPNAGSNGYFVSLTVVNNLLNTKDFFSVPITNAEFAVMKTACSFALPHIMGWNQITNQQSRGTVDLQPKGGSQV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00511 196 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 17 181 IPR013742 GO:0003697|GO:0006355|GO:0006952
Spst6g00511 196 SUPERFAMILY ssDNA-binding transcriptional regulator domain 19 181 IPR009044 GO:0003677|GO:0006355
Spst6g00511 196 Pfam Whirly transcription factor 28 162 IPR013742 GO:0003697|GO:0006355|GO:0006952
Spst6g00511 196 Gene3D Transcriptional Coactivator Pc4; Chain A 15 185 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00511 Spst-Chr6 4699805 4702647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00511 19 180 Whirly Transcription Factor Family AT1G71260 71.605 2.02e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Spst6g00511 Whirly 2.4e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00511 K26561 - gmx:100817863 319.316