Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00509 ATGATGCGATACAAAGAGGAAAAAGAAGCGAAGAAGGAATCTTTTAGAAAATATCTGGAAACCAGTGGAGCTGTGGATGCTCTCACCAAAGTTCTGGTTGCTTTGTATGAGCAAAACGACAAGCCTTCTTCTGCCGTCGAGTTCATTCAACAGAAGTTGAGCTGTCCTTCCATCTCCGAGTATGAAAAATTGCAGGCTGAATTCTCCGATCTGCAAATCAAATACAATGAGTTGTTAGCAGCGCACCAGAAAACCTGCAAAGAGAACTCCTATGCTGACTATTTGACGAACCCCTTTAATCCTTTTTATTTCCACGCCAATGAAAGCCCTTCTCAAGCACTAATTTTCCCTCCTTTAAATGGTCAAAATTATCATGCGCGGGCAAGGATGAAAGTTGGAAGTCTCACCCCTCCCTTGATGACGGACCCATTATATGGAGTATGGGAAAGGGAACTCGGTTATCTTAGGCTCATTAAGGAAAACTTTACCATTAGGGGTTCAAATCTTGAAATCACTAATCTAGGGAGAGCTATAGCTATGCCGATCACCCCTATCTTACTGAGGTTCGAAGAAATGAAAAGTTCACATGCCTTGGCATCAGTATCTAAGGAATTGACTGACAGTGAATCTCCAAAAGATGAATTTTGCTTGCTTCTTGGATTACAATCAAAGTTTGAAGTTGAAGATTTGATGGTCCCAATCACTATGATTTTGGGGGATACAAGTGATGATGAAGTTTGTCTTGTGTTTGATCATGTTATTGAGTTGCAATTGTGCGAACCGTGGCAGCACACACATCTTTCTGTCCCCAACATGGAACCTAATGACAACCAACTCACCTCCTTCTTCCACCACCACCACCCCCACCCCCACCACCACCATCACCACCAGCCACCGCCACCGCCGCCCGCCCCCGCCACCACTGCCTCCCCCACCAACGGCCTCTTGCCCAACGCCGACGGGTCCCACATACTCTACCCTCACTCCGTCGCCTCCGCGGTGTCCTCACAGCTGGAACCAGCGAAGAGGAAGCGGGGGCGGCCCAGGAAGTACGGCACGCCGGAGCAGGCTCTCGCCGCGAAAAAAGCAGCTTCGACGTTGTCTCAGTCGTTCTCCGCGGACAAGAAGCACCACTCCTCGACGTTCACTTCTTCCTCTTCTTTCTCGTCCAAGAAATCTCATTCCTTCCCTCTAGGCAATGCAGGGCAAGGGTTCACTCCGCATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCTATTTATGCAACAAAGTAGGCGTGAAATGTGTATTCTGTCTGCATCTGGTTCCATCTCTAATGCCTCTCTTCGCCAGCCAGCAACCTCAGGAGGCAACATTACGTATGAGGGTCGGTTTGAGATTATTTCACTTACTGGTTCTTATGTCCGTAATGAACTTGGGACTCGAACTGGTGGTCTCAGTGTATGTTTATCTAACACTGATGGACAAATCATAGGTGGTGGAGTTGGTGGGCCGCTTAAAGCAGCTGGTCCAGTTCAGGTCATCGTTGGAACATTTTTTATTGACAACAAGAAGGATTCTGGTACTGGTCCAAAAGTTGATGCCTCTGCAAGCAAGTTGCCACCACCAGCTGTTGAACCAGTATCAAGTTTAGGTTTCCGCCAATCAGTCGACTCTCCCAGTGGAAATCCAATCCGTGGAAATGACGAGCATCAAGCTATGGGGGGAACTCATTTCATGATTCAACAGCTTGGTTTGCAGGGAACGCCTCCTCGGTCCACAGACTGGGGTCGTCCGGATCCAAGAAATACCGGTTTTGAGCTGACAGGAAGGACAGGTCATGGGGCGCACCAGTCTCCTGAGAATGGTGGCTATGAGCAAATTCCCGATTGA 1887 0.4822 MMRYKEEKEAKKESFRKYLETSGAVDALTKVLVALYEQNDKPSSAVEFIQQKLSCPSISEYEKLQAEFSDLQIKYNELLAAHQKTCKENSYADYLTNPFNPFYFHANESPSQALIFPPLNGQNYHARARMKVGSLTPPLMTDPLYGVWERELGYLRLIKENFTIRGSNLEITNLGRAIAMPITPILLRFEEMKSSHALASVSKELTDSESPKDEFCLLLGLQSKFEVEDLMVPITMILGDTSDDEVCLVFDHVIELQLCEPWQHTHLSVPNMEPNDNQLTSFFHHHHPHPHHHHHHQPPPPPPAPATTASPTNGLLPNADGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAASTLSQSFSADKKHHSSTFTSSSSFSSKKSHSFPLGNAGQGFTPHVIAVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGNITYEGRFEIISLTGSYVRNELGTRTGGLSVCLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDSGTGPKVDASASKLPPPAVEPVSSLGFRQSVDSPSGNPIRGNDEHQAMGGTHFMIQQLGLQGTPPRSTDWGRPDPRNTGFELTGRTGHGAHQSPENGGYEQIPD 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00509 628 CDD DUF296 406 517 IPR005175 -
Spst6g00509 628 MobiDBLite consensus disorder prediction 362 395 - -
Spst6g00509 628 MobiDBLite consensus disorder prediction 524 570 - -
Spst6g00509 628 Coils Coil 61 81 - -
Spst6g00509 628 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 290 545 IPR039605 GO:0003680
Spst6g00509 628 PRINTS C-Myc-binding protein signature 9 19 - -
Spst6g00509 628 PRINTS C-Myc-binding protein signature 19 33 - -
Spst6g00509 628 PRINTS C-Myc-binding protein signature 33 47 - -
Spst6g00509 628 MobiDBLite consensus disorder prediction 584 628 - -
Spst6g00509 628 MobiDBLite consensus disorder prediction 550 564 - -
Spst6g00509 628 ProSiteProfiles PPC domain profile profile. 401 541 IPR005175 -
Spst6g00509 628 MobiDBLite consensus disorder prediction 284 298 - -
Spst6g00509 628 Gene3D - 407 533 - -
Spst6g00509 628 MobiDBLite consensus disorder prediction 334 395 - -
Spst6g00509 628 Pfam Plants and Prokaryotes Conserved (PCC) domain 407 517 IPR005175 -
Spst6g00509 628 SUPERFAMILY AF0104/ALDC/Ptd012-like 403 518 - -
Spst6g00509 628 MobiDBLite consensus disorder prediction 269 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00509 Spst-Chr6 4650614 4665726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00509 320 628 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 51.744 2.46e-82 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00509 - - gmx:100809675 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00509 6 4650614 4665726 Spst6g00509 6 4650614 4665726 ECH