Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00507 ATGGAGTCTCGGTGCGGTTCATGTAAAGCTGCGTGGGTCCCACTGTCTCACTCTTTCTTCCTGCAAAAGGAAAAAGGTAGCTGTGATTTCTTTTTAGTCGCCATGGAAACAGGGTTGCTCCTTTTGTTTTTCTTGCTGTTGGTGATGGTGCTTTCTGTGCGTGCCATCGATGTGGAATATTCACAGTGCAATTGTGATGAGGAAGGGCTTCGGAGCATCCACAACGTCTTGGTTTGCCAGAAAGTGAGTGACTTTTTCATTGCCATTGCATATTTTTCCATTCCCCTCGAGCTTCTTTACTTTGTCAGCCGCTCCAATGTACCCTTTAAATTGGTCTTCCTTCAATTCATTGCCTTCATAGTTCTCTGTGGATTAACCCATTTGCTCAACGCCTATACTTACTATGGCCCCCACTCCTTTCAGTTGTTTCTTTCCCTCACTGTTGCTAAGTTCCTCACTGCTCTTGTCTCCTGTGCCACTGCCATTTCCTTTCCCACTCTCATACCTCTTCTGCTCAAAATCAAAGTCAGGGAGCTCTTCTTGAGGCAGAATGTTTTGGAATTGGGTCAAGAGGTTGGGATCATGAAGAAACAAGAGGAAGCTAGTTGGCATGTTAGGATGCTCACCTGTGAGATTAGGAAGTCTCTCGATAAGCATACCATCTTGTATACCACACTTGTTGAGCTTTCCAAGGCCTTGGACTTGCACAATTGTGCAGTTTGGATGCCTGATTATGATAGGAGAGAAATGCATTTGACACATGAGTTGAAATCAAACACAGCAAGTAGTTTTCACAATTCTATTCCTATTAGTGATCCCGATGTGTTGGACATAAAGAAGAGCAAAGGGGTTTGGATTTTGCGGCCTGATTCTGCACTAGGAGCTGCAAGTAGCGGTGGTGGATCAGGGGATTCAGGTGCCGTGGCAGCCATCCGCATGCCGATACTTCATGTTTCCAATTTCAAAGGAGGGACACCAGAGTTGGTTGAGACATCTTATGCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAGGGCTTGGGCCTCCCATGAAATGGAGATAGTGGAAGTGGTTGCTGACCAGGTGGCTGTGGCCTTGTCTCACGCGTCTGTTCTTGAAGAGTCTCAGCTCATGAGCCAGAAACTTGCAGAGCAGAACCGGGCACTGCAACAGGCTCAGAAGAATGCAATGATGGCCAGGAAGGCAAGGAGCTCGTTTGAGAAAGTTATGAGTCATGGAATGCGGAGACCTATGCATTCAATCCTTGGCTTGCTTTCAATGTTTCAAGAGGATAATATAAGGCCAGAACAGAAGATTGTTATTGACTCAATTTTCAAAGTTAGCAATGCACTGTCACGATTGATTAATGATGTGATGGAGATTTCTGCAAATGACGATGGAAATTTTCGGTTAGAGATGAAACCTTTCAGTCTGCATTCCATGATGAGGGAAGTGTCTTGCACTAGCAAGTGTTTGTGTATATATAAAGGGTTTGGTCTTGAAGTTGATGTTGACAAGTCTTTGCCTGATCTGGTCGTTGGTGATGAGGCAAGGTCTTTCCAAGTAATTTTACATATGATTGGCCATTTATTGAACATATATGATAAAGGAATACTCGTATTTAAAGTTTTTCTGGACAATGATAGTGGAGAAAAAGATGATAGAAGTTTTGGAATATGGAGATCAAGCATGCAAAATGATTATGTACAAATAAAATTTAAATTTCATATAAATGGTATTAGTTCCCAGTCGGATGAATCATTTTCAATTACAAATTATACTGTTAAAAGGCACTACAACAATGAACATAAGGAAGGCCTGAGCTTCAGCATGTGCAAAACGCTGGTGCAGATGATGCGAGGTAATATTTGGATATCAACTAACTCTGTGGGTTTGGCACAAGGAATGACACTTCTTCTCAAGTTTCAGACAGGATCATCTCATGGAAGATTCAGTCTTGCACCTAAAGATTTTTCAAACACTCAGTTGAAAGGGCTTAAGGTTGTGTTAGCTGATGATGATGATGTTAACAGAACTGTGACCAAGAAGCTGCTTGAGAAACTGGGGTGTCAAGTAACTTCTGTTTCCTCTGGATTTGAATGTCTTGGTGCTGTAAGTGCCCCTGGTAATTTGTTCAAAATTATTCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCAAGAAGGATTCGGAAATTGCAAAGCCATATTTGGCCCTTGATCATTGCTTTTACTGCTAGTGCAGAAGAACACATAAAGGAGAGATGTCTGCAGGTGGGAATGAATGGATTAATTCGAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTAGAACAGTCATGCAGCGTACAGGTGAAACATTGTGA 2382 0.4228 MESRCGSCKAAWVPLSHSFFLQKEKGSCDFFLVAMETGLLLLFFLLLVMVLSVRAIDVEYSQCNCDEEGLRSIHNVLVCQKVSDFFIAIAYFSIPLELLYFVSRSNVPFKLVFLQFIAFIVLCGLTHLLNAYTYYGPHSFQLFLSLTVAKFLTALVSCATAISFPTLIPLLLKIKVRELFLRQNVLELGQEVGIMKKQEEASWHVRMLTCEIRKSLDKHTILYTTLVELSKALDLHNCAVWMPDYDRREMHLTHELKSNTASSFHNSIPISDPDVLDIKKSKGVWILRPDSALGAASSGGGSGDSGAVAAIRMPILHVSNFKGGTPELVETSYAILVLVLPNSNSRAWASHEMEIVEVVADQVAVALSHASVLEESQLMSQKLAEQNRALQQAQKNAMMARKARSSFEKVMSHGMRRPMHSILGLLSMFQEDNIRPEQKIVIDSIFKVSNALSRLINDVMEISANDDGNFRLEMKPFSLHSMMREVSCTSKCLCIYKGFGLEVDVDKSLPDLVVGDEARSFQVILHMIGHLLNIYDKGILVFKVFLDNDSGEKDDRSFGIWRSSMQNDYVQIKFKFHINGISSQSDESFSITNYTVKRHYNNEHKEGLSFSMCKTLVQMMRGNIWISTNSVGLAQGMTLLLKFQTGSSHGRFSLAPKDFSNTQLKGLKVVLADDDDVNRTVTKKLLEKLGCQVTSVSSGFECLGAVSAPGNLFKIILLDLHMPEMDGFEVARRIRKLQSHIWPLIIAFTASAEEHIKERCLQVGMNGLIRKPILLHEIADELRTVMQRTGETL 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00507 793 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 388 469 IPR036097 GO:0000155|GO:0007165
Spst6g00507 793 ProSiteProfiles Histidine kinase domain profile. 410 647 IPR005467 -
Spst6g00507 793 Gene3D - 195 368 IPR029016 -
Spst6g00507 793 Pfam Response regulator receiver domain 669 781 IPR001789 GO:0000160
Spst6g00507 793 FunFam Ethylene receptor 665 789 - -
Spst6g00507 793 SUPERFAMILY GAF domain-like 220 370 - -
Spst6g00507 793 Coils Coil 373 403 - -
Spst6g00507 793 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 58 789 - -
Spst6g00507 793 ProSiteProfiles Response regulatory domain profile. 668 786 IPR001789 GO:0000160
Spst6g00507 793 Gene3D - 667 792 - -
Spst6g00507 793 PIRSF Ethylen_sen_hybr_HK 35 793 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Spst6g00507 793 SMART gaf_1 217 377 IPR003018 GO:0005515
Spst6g00507 793 SMART HisKA_10 403 468 IPR003661 GO:0000155|GO:0007165
Spst6g00507 793 Gene3D - 369 466 - -
Spst6g00507 793 SMART REC_2 667 782 IPR001789 GO:0000160
Spst6g00507 793 FunFam Ethylene receptor 4 370 464 - -
Spst6g00507 793 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 472 629 IPR036890 -
Spst6g00507 793 Gene3D - 467 647 IPR036890 -
Spst6g00507 793 SUPERFAMILY CheY-like 663 788 IPR011006 -
Spst6g00507 793 CDD HATPase_ETR2_ERS2-EIN4-like 509 641 - -
Spst6g00507 793 CDD REC_ETR-like 667 782 - -
Spst6g00507 793 CDD HisKA 402 463 IPR003661 GO:0000155|GO:0007165
Spst6g00507 793 Pfam GAF domain 219 367 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00507 Spst-Chr6 4635658 4640336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00507 57 791 Miscellaneous Gene Families AT3G04580 60.776 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst6g00507 GAF 4e-11 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00507 K14509 - gmx:100805023 1325.07