Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00506 ATGAACATGTCGATCATGCGAAGGCCTAGGGGTCGTCCTCGAGGCTCAAAGAACAAGCCCAAATCAGCATTGCTCATGACCAGGGACACCCCTAATGTTATCGAAAGTCACATCATCGAGATACCAGGCGGAACCAACATCACAAAGAGCTTGATCCAGTTCGCGAGAAGGAAAGAACGAGGCTATTGTGTTCTGAGCGCCACCGGGAACATCAGGAACGCGACACTGCAGCAGTCGTTGATCCCTGACACGGTGATGACGGTGGAAGGTGAGATGCAGATACTGTCGTTGAGCGGTTCATTTTTGGCCGGAGCTACACCACCTGATTTATCTGTTCATCTGGCGGGTGGTAAGGGACAAGTTGTGGGGGGCAAAGTGGTGGGTCCATTGGTGGCATCAGGAACAGTTATCGTAATTTTGGGTGCGTTTTGTAGTGCTGCATTTGAGAGATTACCCATTGAGGGTGAAGAAGAGGTTTCCTCTTCCAATCCACTGTATCACGCATGA 507 0.5049 MNMSIMRRPRGRPRGSKNKPKSALLMTRDTPNVIESHIIEIPGGTNITKSLIQFARRKERGYCVLSATGNIRNATLQQSLIPDTVMTVEGEMQILSLSGSFLAGATPPDLSVHLAGGKGQVVGGKVVGPLVASGTVIVILGAFCSAAFERLPIEGEEEVSSSNPLYHA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00506 168 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 161 IPR014476 GO:0003680
Spst6g00506 168 Pfam Plants and Prokaryotes Conserved (PCC) domain 36 143 IPR005175 -
Spst6g00506 168 MobiDBLite consensus disorder prediction 1 22 - -
Spst6g00506 168 CDD DUF296 37 115 IPR005175 -
Spst6g00506 168 SUPERFAMILY AF0104/ALDC/Ptd012-like 33 154 - -
Spst6g00506 168 ProSiteProfiles PPC domain profile profile. 31 165 IPR005175 -
Spst6g00506 168 Gene3D - 35 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00506 Spst-Chr6 4626141 4626647 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00506 5 166 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 50.303 1.85e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00506 - - var:108344319 228.024