Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00504 ATGGAGCAATCGGTTTTGGATGACATAATCAATCGCCTCCTCGAAGTTCGTACTCGACCGGGGAAGCAGGTCCAGCTATCGGAGTCCGAGATCCGTCAACTCTGCGTCGTTTCCAGAGAGATTTTCTTGCAACAACCTAATTTATTGGAGCTCGAAGCTCCTATTAAGATTTGTGGTGATGTACATGGGCAATATTCTGATCTCTTGAGGCTTTTTGAGTACGGTGGATTACCTCCCGAAGCCAACTACTTGTTTTTGGGGGATTATGTGGATAGAGGGAAACAGAGTTTAGAAACAATTTGCCTTCTCCTTGCTTATAAAATAAAATATCCTGAGAACTTTTTCCTGTTAAGGGGAAACCATGAATGTGCTTCTATAAACCGGATATATGGCTTCTATGATGAGTGCAAGAGAAGGTTCAATGTAAGGTTATGGAAGACATTTACAGAGTGCTTCAATTGTCTGCCAGTGGCCGCCCTTGTTGATGAAAAGATTTTGTGTATGCATGGAGGACTTTCTCCTGACTTACATAATTTGGATCAGATTAGAAATCTACCGAGGCCCACAGATGTTCCTGATACAGGTTTGCTTTGTGATCTCCTTTGGTCTGATCCAAACAAAGAAATTCAAGGATGGGGAATGAATGATAGAGGAGTTTCATATACATTTGGTGCTGATAAGATCTCAGAGTTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGAGCGCATCAGGTTGTGGAAGATGGATACGAGTTCTTTGCTAATCGACAGCTTGTAACAATATTTTCAGCGCCTAATTATTGTGGGGAGTTTGATAATGCCGGCGCTATGATGAGCGTTGATGAAACACTAATGTGCTCTTTCCAAATATTAAAACCAGCTGATAAAAAGGCTAAGCACAATTTTGGCAGTACAACCACTGCTAAGCCTGGAAACTCCCCAGCAGGTGTAAAGTCCTTCCTGGGAGCGAAAACATGA 981 0.42 MEQSVLDDIINRLLEVRTRPGKQVQLSESEIRQLCVVSREIFLQQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALVDEKILCMHGGLSPDLHNLDQIRNLPRPTDVPDTGLLCDLLWSDPNKEIQGWGMNDRGVSYTFGADKISEFLQKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKAKHNFGSTTTAKPGNSPAGVKSFLGAKT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00504 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Spst6g00504 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Spst6g00504 326 SUPERFAMILY Metallo-dependent phosphatases 18 299 IPR029052 -
Spst6g00504 326 Gene3D - 1 305 IPR029052 -
Spst6g00504 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 302 - -
Spst6g00504 326 CDD MPP_PP1_PPKL 5 294 - -
Spst6g00504 326 FunFam Serine/threonine-protein phosphatase 1 303 - -
Spst6g00504 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Spst6g00504 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Spst6g00504 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00504 Spst-Chr6 4617688 4621824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00504 33 242 Calmodulin-binding Proteins AT5G63870 28.800 1.01e-26 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00504 6 4617688 4621824 Spst10g00415 10 4379942 4383523 ECH
Spst6g00504 6 4617688 4621824 Spst6g00504 6 4617688 4621824 ECH