Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00496 ATGAAGACTCCTTGTTGTGAGAGAATGGGGTTGAAGAAGGGACCTTGGACTGCTGAAGAAGATCAGATATTGGTTTCTCATATTCAACGATATGGCCATGGGAACTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAACTACCTGAGACCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAACTACATGAAATTCTTGGAAATAGGTGGTCTGCTATAGCCACAAGCTTACCCGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATCCAGAAAAGTGGAGTGCACATTAAGGGAAATGCTCCATCACATATCTTGCAAGAGGCACAAGCAAATAGTTCATCAAGTTCAAGTGCTGCCTCCAGTGTCTATGGAATCAATCCTCCTGTTGTAGGTACAGGATTTTACGGTGCAGTCTCCTCATCAGATATTTTTGGAGAAACTGTGGACAATCATAGCTCTTGTCAGCTAAGTGAAGAAATGGAATTCTGGTACAATATATTCATCAAATCAGGGCAAACATCATGA 603 0.4163 MKTPCCERMGLKKGPWTAEEDQILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHEILGNRWSAIATSLPGRTDNEIKNFWHTHLKKRIQKSGVHIKGNAPSHILQEAQANSSSSSSAASSVYGINPPVVGTGFYGAVSSSDIFGETVDNHSSCQLSEEMEFWYNIFIKSGQTS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00496 200 SMART sant 65 113 IPR001005 -
Spst6g00496 200 SMART sant 12 62 IPR001005 -
Spst6g00496 200 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Spst6g00496 200 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Spst6g00496 200 SUPERFAMILY Homeodomain-like 9 107 IPR009057 -
Spst6g00496 200 CDD SANT 68 111 IPR001005 -
Spst6g00496 200 Gene3D - 12 65 - -
Spst6g00496 200 CDD SANT 15 60 IPR001005 -
Spst6g00496 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Spst6g00496 200 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Spst6g00496 200 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 166 - -
Spst6g00496 200 FunFam MYB-related transcription factor 12 65 - -
Spst6g00496 200 Gene3D - 67 143 - -
Spst6g00496 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Spst6g00496 200 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00496 Spst-Chr6 4505759 4506619 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00496 2 193 MYB Transcription Factor Family AT2G31180 47.845 7.89e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst6g00496 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00496 K09422 - gmx:102663040 340.887