Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00489 ATGGGCTCAATTGGGTGGTCTCGACGAACGGTTATGGGCTGGAAAGGCGGCATCTTGCGTGGTGGGTCGTTTTCTTTAATTTGTGGTTGTAAAGAGGGTGGTGTGGCAGTTCTGGTGTTTCTGTGTCACGGACTAGGACACTTTCTGTCAAAGCTTTTAACTGGGAATTGCAATTTGATGGCCCCCTCAAAAACTCTTTTTCTCCAAGCCTCCCTTCTGCCAAAGCTGACGCTTGAACTGAACTTGTTTATAGTTTACCATTCATATTGTGGTAAAGGACTGACAAAGCTGATTCACTTGGGAACCTGGACAGCAATGTCTTCATCTTCTCGTATTCTTCCCACTCCCCTAGAAAACAAGTATATGAAACCCCCAGATTCTTTTCATCTTTCACCTGCCAGTGATCTGGCTGCCAAATCTGTCTCATCTAATGCAATCAGAAGTGCCGGGAAGATGATCTCATCACCCTCTGAATTTACTGATGGCATCCCCTTTTCCTCTGCTTCACTTCATGAAAGGCAATATCAAGATTCCCCCTTCGTTTCTTCGACATTGGGTGACAATGTGTCTTCCGAAATACACTCAACGTCATTCATTCCTCTCCCTCAAGAAACCGAAGATATTACCTGGGGACCAGATCCATTTCAGGATATTCTAGGGTTTCCGGAAAATATGTCTGTCCAGCATGATCAGGAGGGAAATAATGCCTGTTACATAAATGATGATAATGTTAAAAGAACTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCAATTGAAGATTCTCTTCACCCAAACTGGAGTCAGCTTCTTGGTGATGATAATGTAGCAGAACCAAAACCAAAGCCATTGCAGGTTCCTCAGCTGCAGGATACACAATCTGGAGAAGTTCTTGGCAATTCAGGAGCAACCACACCACAGACTAAGACCAGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTGTTGAATCTAATGAAAGTTGAGAGCCTTACCATCTATCATGTAAAAAGCCACTTGCAGAAGTATAGAACTGCCAGATACAAACCAGAGCCATCAGAAGGAACGTCAGAGAAAAAGGCGACTCCAATAGAAGAAATGAAATCTCTAGACCTGAAAACGAGTAAAGGGATCACTGAAGCATTACGATTGCAGATGGAACTCCAGAAGCGACTTCACGAACAACTAGAGATCCAAAGAAAGTTGCAGATTCAAATTGAAGACCAAGGGAAACGTCTTCAGATGATGTTTGAGAAACAAAGAGAGATGGGTGACAACAAGGTTAATGGCTCTTCCCACAAGGCCACCACTGTCACCACTCCATCAGACACAGTGCTTCCTTCTTCTCCTCTGGTAGAAACCTCAAATGAAGAACGTGTGAAAGGCATGGATGAAGAGAAGGATGAAAGCACAAAGCAAAAGGAGGGTGAAGGTGAAGAAGTGATGAATGAAGATGAAGTTGCACCACCTACAAAACGGGTGAAAAGTTCATAA 1548 0.4393 MGSIGWSRRTVMGWKGGILRGGSFSLICGCKEGGVAVLVFLCHGLGHFLSKLLTGNCNLMAPSKTLFLQASLLPKLTLELNLFIVYHSYCGKGLTKLIHLGTWTAMSSSSRILPTPLENKYMKPPDSFHLSPASDLAAKSVSSNAIRSAGKMISSPSEFTDGIPFSSASLHERQYQDSPFVSSTLGDNVSSEIHSTSFIPLPQETEDITWGPDPFQDILGFPENMSVQHDQEGNNACYINDDNVKRTDFGEWVDQLMSIEDSLHPNWSQLLGDDNVAEPKPKPLQVPQLQDTQSGEVLGNSGATTPQTKTRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVESLTIYHVKSHLQKYRTARYKPEPSEGTSEKKATPIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIEDQGKRLQMMFEKQREMGDNKVNGSSHKATTVTTPSDTVLPSSPLVETSNEERVKGMDEEKDESTKQKEGEGEEVMNEDEVAPPTKRVKSS 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00489 515 MobiDBLite consensus disorder prediction 441 515 - -
Spst6g00489 515 MobiDBLite consensus disorder prediction 447 473 - -
Spst6g00489 515 MobiDBLite consensus disorder prediction 363 384 - -
Spst6g00489 515 Pfam MYB-CC type transfactor, LHEQLE motif 396 440 IPR025756 -
Spst6g00489 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 307 366 IPR017930 -
Spst6g00489 515 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 300 488 IPR044848 GO:0003700
Spst6g00489 515 Gene3D - 308 367 - -
Spst6g00489 515 MobiDBLite consensus disorder prediction 475 515 - -
Spst6g00489 515 Pfam Myb-like DNA-binding domain 311 362 IPR001005 -
Spst6g00489 515 Coils Coil 397 417 - -
Spst6g00489 515 NCBIfam myb-like DNA-binding domain, SHAQKYF class 309 363 IPR006447 GO:0003677
Spst6g00489 515 SUPERFAMILY Homeodomain-like 307 363 IPR009057 -
Spst6g00489 515 FunFam Myb family transcription factor 308 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00489 Spst-Chr6 4469597 4473156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00489 148 460 G2-like Transcription Factor Family AT3G04450 45.170 9.31e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst6g00489 Myb_DNA-binding 2.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00489 - - gmx:100803267 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00489 6 4469597 4473156 Spst6g00489 6 4469597 4473156 ECH
Spst6g00489 6 4469597 4473156 Spst7g00664 7 6617108 6620668 PCT