Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00487 ATGATTGTCACTATGGAGGTGGAGTTGAGCCCTGGAGCACTAGAGGAGTCAAATACCTCCAGGGTTAATCCTAACTATGCCAATGAATTTGAGGTAGGAGCATTCATGTTAGAAACACAGCCTAGGCCATTTTGCCCCTTAGTCTTGATTGCGAAGTTTGTTCAAGAGCAGGAACAGGATATGCAAAGTAAAAGTGTTTTACCAGCATGCTACAATAGTACCCGAGCATATAATGGAAATATTATGCTCGCTAGTTCTTCACGTCTTGGAGAAGTTAAAATATCTTTGAATTGTGACTCAGCCTTGGGACGACTAAACTTCAGTATTCCTAATTTGGATGTTGTTATGAAGTTCATGGACAGGAAGTACCTTAGCTCTTGCTACACTGTTGAGCCTCAATTTTCTACGGCAAAGCTATTAAATGACCTTTGTAAGATTTTTCTCCAATTGGGGCTTCGAAAGGGATCAAATTCCAACCAGGCCATTTCACATTCACAGCAATACGTTAATCAAGGTGAAAGGAAACCCTTTAATTTTATCAGTGACATAACAAAAGGTTCTGAAAAGGTGAAAATATCATTAATAGATGAATTTGGCAGTGACTACTTGCCAAAGTTTAATTACATACCAAACAGTATAATATATCAAAGTGCTATTGTAAGCATTTCTTTGGCCCGGATTTCGGATGAGGGTTGTTGTTCTGATTGTTCCGGTGACTGTCTTTCATCATCACTGCCTTGTGCTTGTGCTCAGGAAACTGGTGGGGAGTATGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACAGCTTGTGTGACTATGAAGAATGAACCTCAAGATCATCATTATGTGTACTGTCAGGAGTGCCCTTTGGAGAAGTCCAAGAATGAATACATGCCTGAACGATGCAAGGGGCACATGCTTAGGAAATTTATAAAGGAATGTTGGAGGAAATGTGGATGTGACATGCTTTGCGGGAATCGGATAGTGCAACGAGGTATTGCATGCAAATTGCAGGTGTTCTTAACCCGAGAAGGTAAAGGGTGGGGCCTTAGACCGTTAGAAGATCTACCAAAAGGAACTTTCGTATGTGAATATGTTGGAGAAATATTAACCAATATGGAGTTATACGATAGGATTATGCATGAGAGTGGCAATGACAGACATACATATCCATTAACTCTTGATGCGGACTGGGGATCAGAAAAGGGGTTAAAGGATGAGGAGGCGCTGTGTTTAGATGCAACATATAATGGAAATGTTGGAAGGTTTATCAACCATAGATGCTATGATGCAAATCTCATAGACGTTCCCGTTGAAATAGAGAGTCCAGATCACCATTATTATCATGAAAGTCAGCGCATACGAGGAATTGACATGGGTAAGTCAGCTGTGCGTCTGTAA 1410 0.405 MIVTMEVELSPGALEESNTSRVNPNYANEFEVGAFMLETQPRPFCPLVLIAKFVQEQEQDMQSKSVLPACYNSTRAYNGNIMLASSSRLGEVKISLNCDSALGRLNFSIPNLDVVMKFMDRKYLSSCYTVEPQFSTAKLLNDLCKIFLQLGLRKGSNSNQAISHSQQYVNQGERKPFNFISDITKGSEKVKISLIDEFGSDYLPKFNYIPNSIIYQSAIVSISLARISDEGCCSDCSGDCLSSSLPCACAQETGGEYAYTPQGLLKEEFLTACVTMKNEPQDHHYVYCQECPLEKSKNEYMPERCKGHMLRKFIKECWRKCGCDMLCGNRIVQRGIACKLQVFLTREGKGWGLRPLEDLPKGTFVCEYVGEILTNMELYDRIMHESGNDRHTYPLTLDADWGSEKGLKDEEALCLDATYNGNVGRFINHRCYDANLIDVPVEIESPDHHYYHESQRIRGIDMGKSAVRL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00487 469 Pfam Pre-SET motif 183 330 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst6g00487 469 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 20 452 IPR025776 -
Spst6g00487 469 Gene3D SET domain 157 453 IPR046341 -
Spst6g00487 469 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 59 452 - -
Spst6g00487 469 Pfam SET domain 350 438 IPR001214 GO:0005515
Spst6g00487 469 SMART preset_2 180 322 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst6g00487 469 SUPERFAMILY SET domain 190 452 IPR046341 -
Spst6g00487 469 ProSiteProfiles SET domain profile. 338 469 IPR001214 GO:0005515
Spst6g00487 469 CDD SET_SETDB-like 204 452 - -
Spst6g00487 469 ProSiteProfiles Pre-SET domain profile. 232 335 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Spst6g00487 469 SMART set_7 338 469 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00487 Spst-Chr6 4453124 4456269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00487 314 452 C2H2 Transcription Factor Family AT2G23740 44.286 2.87e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Spst6g00487 Pre-SET 2.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00487 - - vun:114188074 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00487 6 4453124 4456269 Spst10g00189 10 1830458 1835183 PCT