Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00479 ATGGAACAAGAAGAATACACGAAGGAGCAGATAAATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTTTGGACCTTATTGAAAAGAAACCTGGAGGAATAATTGCACTCCTTGATGAAGCTTGTATGTTTCCAAAGTCCACACATGAAACATTTTCAAACAAACTTTATCAAACATTTAAGAATAACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACAGATTTCACTATTTCTCATTATGCTGGCGAGGTGACCTACCAATCTGACCAATTTTTAGACAAAAACAAAGATTATGTGGTTGCTGAACATCAAGATTTATTGAGTGTTTCCAAATGTCCATTTGTAGCTGGCCTTTTCCCTCCACTTCCAGAAGAGACATCCAAATCTTCTAAATTTTCTTCAATTGGTGCTCGATTTAAGCTGCAACTACAGCAATTAATGGAAACACTAAGTTCTACAGAGCCTCATTACGTTAGATGTGTGAAACCAAACAATCTCCTCAAGCCTTCAATTTTTGAGAATTCAAATATTATGCAGCAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAATTTATAAACCGATTTTCCCTTCTTGCTCCAGAGGTCACAGAAGCACATCATGATGAGAAGACTGTTTGCCAAGATATTCTGGAAAAAGTGGGGCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGGAGAGCTCAAATGCTCAGTAATGCCGCAAAAACTATCCAACGGCGTATCCGAACTCATCAAGCTCGTAAACATTATGTTGCACTACGGAAGACGACTACAGTGGTTCAGTCTATTTGGAGAGCAAGACTTGCATTCAAATTTTATCAGAACTTGAGAAAGGATGCAGCTGCCGTGAAAATTCAGAAGAATATACGCAGATATGCATCTAGGAAAGCCTATACTAAACTCAAAGCATCAGTACTTGCTTTGCAAACAGCTTTAAGGGGAATTGCTTCCCTCAAGGAGTTCAGATTTAGGAAACAGACTAAAGCTTCCATCATTATTCAGGCTGCAAGAGAAACTGGTGCACTTAAGGAGGCAAAGGACAAGCTTGAAAAAAGAGTGGAGGAACTCACTTGGCGTCTTCAACTAGAGAAAAGTTTAAGGAACAACCTAGAAGAGTCCAAAGCACAAGAGATAGCAAAACTGCAGAATTCACTGCAGGAGATGCAGAACAAAGTTGATGAAACCAATGCATTACTTATAAAGGAGCGAGAGGCTGCAAAGAAAGCTACTGAGGAAGCACCTCCTATTGTTAAAGAAACTCAGGTTATTGTTGAAGACACTGAGAAGATCGAATCACTAACAGTGGAAATTGAGACTCTAAAGACCTCCCTTGAGTCCGAGAAACAGAAAGCTGACGACTATGAAAGGAAATATAATGAGTCCCAAGCTTCTTGTGAGGAAACGAGTAAAAAATTAGAAGACGCAGAAAAGAAGGTTCGTCAGCTCCAAGAATCTTTGACCAGGCTAGAAGAGAAGATTACTAATTCAGAATCAGAGAATCAAGTTCTACGTCAACAAGCTGTGTCGATGGCACCAAATAAGTTCCTCTCAGGACGCACTAGATCAGTTATTCAGAAACTGGATGGTGGACATATTGGAATGGAAGCAAAGACAACTTTGGATATGCATAGCTCATCAATTAACCACAGGGAATCCCCTGAAGTGGAGGATAAACCACAGAAGTCACTCAATGAGAAACAACAGGAGAACCAAGAATTACTTATTAGATGCATTGCACAAAACCTAGGCTTTGCTGGAAATAGACCAATTGCGGCTTGTATCATATACAAATGCCTCTTGCATTGGAGATCGTTTGAAGTTGACCGTACTAGCGTTTTTGATCGTCTAATCCAAACTATTGGGCACGCAATTGAGCGCACACTAAAAGCAAGTGGTGCGGCTGGAATGGCTCCTCAACGTCGTCGATCTTCATCAGGGAGCCTGTTTGGGAGGGTGACACATAGCTTCCGTGGAACTCCAGCTGGAGTCACCCTTCCCCTAATCAATGGTAGCATGAGCGGTGTAGATACATTAAAAGTTGAAGCCAAGTACCCTGCCCTCCTTTTCAAACAGCAGCTTACAGCTTATGTGGAAAAGATATATGGAATGATTCGAGATAACTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCCAGAACATCCAGAGCGAGCTTGGTTAAGGGATCATCACGTTCAGTTGCAAACACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTCTTAAATACTTTGAAAGCAAATCATGTTCCTCCATATTTGGTTCGTAAGGTTCTTCTTCTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTGAAATCTGGTTTGGGTGAATTGGAGGATTGGTGCAATGGTGCCACAGAAGAGTACTCTGGTTCGGCTTGGGATGAGCTCAAACATATAAGACAGGCTATTGGATTTTTGGTATCTATCTTGCCTGTATCCATCTGCATGGTAATACATCAGAAACCAAGGAAAGCGCTGCATGAAATAAGTCACGACCTGTGCCCAGTCCTCAGCATACAGCAGCTATATCGGATTAGCACCATGTATTGGGATGACAAGTATGGCACACATAGCGTATCCCCTGATGTTATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTCGATGACTTAGCGAAGTCGAAGGAACTGATCGATGTCTCTGATTTAGAGGCCCCACCACTATTACGTGAAAACACTGGCTTTAGTTTTCTGTTGCCACGCCCAGACGCACAGATATCATGA 2988 0.4153 MEQEEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSNKLYQTFKNNKRFIKPKLSRTDFTISHYAGEVTYQSDQFLDKNKDYVVAEHQDLLSVSKCPFVAGLFPPLPEETSKSSKFSSIGARFKLQLQQLMETLSSTEPHYVRCVKPNNLLKPSIFENSNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVTEAHHDEKTVCQDILEKVGLKGYQIGKTKVFLRAGQMAELDARRAQMLSNAAKTIQRRIRTHQARKHYVALRKTTTVVQSIWRARLAFKFYQNLRKDAAAVKIQKNIRRYASRKAYTKLKASVLALQTALRGIASLKEFRFRKQTKASIIIQAARETGALKEAKDKLEKRVEELTWRLQLEKSLRNNLEESKAQEIAKLQNSLQEMQNKVDETNALLIKEREAAKKATEEAPPIVKETQVIVEDTEKIESLTVEIETLKTSLESEKQKADDYERKYNESQASCEETSKKLEDAEKKVRQLQESLTRLEEKITNSESENQVLRQQAVSMAPNKFLSGRTRSVIQKLDGGHIGMEAKTTLDMHSSSINHRESPEVEDKPQKSLNEKQQENQELLIRCIAQNLGFAGNRPIAACIIYKCLLHWRSFEVDRTSVFDRLIQTIGHAIERTLKASGAAGMAPQRRRSSSGSLFGRVTHSFRGTPAGVTLPLINGSMSGVDTLKVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPYLVRKVLLLRRECCSFSNGEYVKSGLGELEDWCNGATEEYSGSAWDELKHIRQAIGFLVSILPVSICMVIHQKPRKALHEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDLAKSKELIDVSDLEAPPLLRENTGFSFLLPRPDAQIS 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00479 995 Pfam Myosin head (motor domain) 2 252 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00479 995 Gene3D Kinesin motor domain 156 198 IPR036961 -
Spst6g00479 995 SUPERFAMILY Tropomyosin 355 540 - -
Spst6g00479 995 SMART MYSc_2a 1 265 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00479 995 ProSiteProfiles Dilute domain profile. 713 934 IPR002710 -
Spst6g00479 995 ProSiteProfiles IQ motif profile. 315 344 IPR000048 GO:0005515
Spst6g00479 995 ProSiteProfiles IQ motif profile. 290 319 IPR000048 GO:0005515
Spst6g00479 995 ProSiteProfiles Myosin motor domain profile. 1 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00479 995 SMART DIL_2 790 916 IPR002710 -
Spst6g00479 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 315 IPR027417 -
Spst6g00479 995 Gene3D - 199 265 - -
Spst6g00479 995 ProSiteProfiles IQ motif profile. 267 295 IPR000048 GO:0005515
Spst6g00479 995 Gene3D - 317 369 - -
Spst6g00479 995 Gene3D - 266 316 - -
Spst6g00479 995 Pfam DIL domain 816 913 IPR002710 -
Spst6g00479 995 Gene3D - 1 155 - -
Spst6g00479 995 PANTHER MYOSIN 1 922 - -
Spst6g00479 995 MobiDBLite consensus disorder prediction 580 603 - -
Spst6g00479 995 Coils Coil 467 543 - -
Spst6g00479 995 Coils Coil 369 449 - -
Spst6g00479 995 MobiDBLite consensus disorder prediction 584 602 - -
Spst6g00479 995 CDD MyosinXI_CBD 602 957 IPR037975 GO:0007015
Spst6g00479 995 Pfam IQ calmodulin-binding motif 269 287 IPR000048 GO:0005515
Spst6g00479 995 Pfam IQ calmodulin-binding motif 317 335 IPR000048 GO:0005515
Spst6g00479 995 SMART iq_5 289 311 IPR000048 GO:0005515
Spst6g00479 995 SMART iq_5 314 336 IPR000048 GO:0005515
Spst6g00479 995 SMART iq_5 266 288 IPR000048 GO:0005515
Spst6g00479 995 SMART iq_5 337 359 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00479 Spst-Chr6 4399327 4408676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00479 1 991 Myosins gene family AT1G54560 71.615 0.0 1560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00479 6 4399327 4408676 Spst6g00479 6 4399327 4408676 ECH
Spst6g00479 6 4399327 4408676 Spst10g00179 10 1685958 1696044 PCT