Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00478 ATGAACAGTGCCAGGCCACGAGTTGGCGCGAAAGCAAAGGGAAGAAGAAGAAGGTGGCGAAGTTACAGGAGCTCCTCAACAATGTCCCATCCTTTCCAAGAATCACTCCATCCACTTCCCACTTCCACTTCCACCACCCTCACACGCCCACGCCCGTACATCGTCTCCTTCCTTTTCCTCACGCATCATCGCCATTGCCAATCCCTTCTACACTCCTCTTTATGCTGCGTAAGCCTCCACCACTTGCCGCTTTACGCCTCAATAATGGGGACTCCAGTGAATATTAGTGTGGGTTCTCATATCTGGGTTGAAGACCCCGACGTGTCTTGGATTGATGGACTGGTATCCAAAATCAATGGAAAGGATGCTGAAATTGACACAACCAATGGAAAGAAGGTTGTCGCAAAGTTATCAAAAATATACCCGAAAGATATGGAAGCCCCTGCGGGTGGAGTGGATGATATGACTAAGCTTTCCTATTTGCACGAGCCCGGAGTCCTCCAGAACTTAAAGACAAGATATGAATTGAATGAAATATATACCTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGGCTACCTCATATTTATGATTCGCACATGATGGAACAATACAAGGGAGCACCATTTGGAGAGTTAAGTCCTCATGTATTTGCCATTGCTGATGTTGCATATAGGGCAATGGTGCACGAAGGAAAAAGCAATTCAATTTTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCGATACCTTGCCTTCTTAGGTGGTAGGGCCGTCACTGAAGGACGAACTGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACGGTCAGGAATAACAATTCCAGGCAAGTCTTACAACTGGAAAGTGGAAGAATCTCGGGAGCAGCTATACGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAGATTAATGATCCTGAACGCAACTACCACTGCTTTTATTTTCTTTGTGCTGCACCACAGGAGTCAAAATGCTATGAACTGGCTGATATAAATGATTCCCGTGAGTATCTTGCTACCAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATGTTGGGAATATTGATTTTGCCAAAGGCAAGGAAGTTGATTCATCAATTCCAAAAGATGATAAAGCCAAATTCCACTTAAAAACAACTGCTGAGCTTCTTATGTGCGATGCCGGTGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACACCTGAGGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCAGCAGTCAGCAGAGATGGCCTGGCAAAAACAATTTATTCTAGGCTCTTTGACTGGTTGGTGAACAAGATTAATAATTCAATTGGACAAGACGCCAATTCTAAATCTTTGATTGGGGTGCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGGTAA 1530 0.4314 MNSARPRVGAKAKGRRRRWRSYRSSSTMSHPFQESLHPLPTSTSTTLTRPRPYIVSFLFLTHHRHCQSLLHSSLCCVSLHHLPLYASIMGTPVNISVGSHIWVEDPDVSWIDGLVSKINGKDAEIDTTNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAINPFQRLPHIYDSHMMEQYKGAPFGELSPHVFAIADVAYRAMVHEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSRQVLQLESGRISGAAIRTYLLERSRVCQINDPERNYHCFYFLCAAPQESKCYELADINDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHVGNIDFAKGKEVDSSIPKDDKAKFHLKTTAELLMCDAGALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVNKINNSIGQDANSKSLIGVLDIYGFESFKSNR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00478 509 ProSiteProfiles Myosin motor domain profile. 150 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 MobiDBLite consensus disorder prediction 9 23 - -
Spst6g00478 509 PRINTS Myosin heavy chain signature 180 199 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 PRINTS Myosin heavy chain signature 237 262 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 PRINTS Myosin heavy chain signature 493 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 PRINTS Myosin heavy chain signature 284 311 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 96 145 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 508 IPR027417 -
Spst6g00478 509 FunFam Myosin 2 376 493 - -
Spst6g00478 509 Pfam Myosin N-terminal SH3-like domain 97 139 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 PANTHER MYOSIN 142 508 - -
Spst6g00478 509 MobiDBLite consensus disorder prediction 1 45 - -
Spst6g00478 509 Gene3D Myosin VI head, motor domain, U50 subdomain 378 508 - -
Spst6g00478 509 SMART MYSc_2a 145 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst6g00478 509 MobiDBLite consensus disorder prediction 24 45 - -
Spst6g00478 509 Gene3D Kinesin motor domain 100 377 IPR036961 -
Spst6g00478 509 Pfam Myosin head (motor domain) 152 351 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00478 Spst-Chr6 4395419 4398862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00478 89 508 Myosins gene family AT1G54560 81.306 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00478 K10357 - gmx:100792816 748.043