Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00459 ATGACTGGTGTTATGGAGGCCGAGCGTGACAAGTACAAGATGATCGATTTTGAAGAAACCGAGTTGCGACTCGGGCTGCCACTGAGTGCAAACGAGGGCGAGTCCACGCTCATCAGAAACACTTGCACTGGTTCCTTCACTGGGAAGAGAGGGTTTTCTGATACAAGCAGTGCTACCGTGGATTTGAAGCTTAACCTTTCCTCAACCTCAAACAATGTCTCCGCCTCACCCTCTTCTCAGATGGCCAAAGAGAACAACGCTTCTGCTACTGCTAACATCACTACACCTCCTTCTCCTCCTAGCGTTAAGGACCCAGCAAAGCCACCCGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATTCCGAAAGAACATCGTTAACAACGTTCAAAGGAGTACCAACAAAGAGGGGGAAAATGGTGGCCCAAGTAGCAACAACAACAACAACGGGAACATGGGAGGAGCTTTTGTTAAGGTGAGCATGGACGGTGCTCCCTATCTACGTAAAGTCGATTTGAAGGTGTACAAGAGTTACCAAGAGCTGTCGGATGCACTCGCAAAAATGTTCAGTTCATTCACCATTGACAAGTGTGGATCCCGAGGCATGAAAGACTTCATGAACGAGACCAAGTTGATTGATCTTCTCAACGGCTCTGATTACGTTCCAACCTACGAAGACAAAGATGGAGACTGGATGCTCGTGGGTGACGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCCTGCGTATAATGAAAGGATCTGAAGCAATTGGGCTAGCACCGAGAGCAGTGGAAAAATGCAAGAACAGAAGCTAG 825 0.4885 MTGVMEAERDKYKMIDFEETELRLGLPLSANEGESTLIRNTCTGSFTGKRGFSDTSSATVDLKLNLSSTSNNVSASPSSQMAKENNASATANITTPPSPPSVKDPAKPPAKAQVVGWPPVRSFRKNIVNNVQRSTNKEGENGGPSSNNNNNGNMGGAFVKVSMDGAPYLRKVDLKVYKSYQELSDALAKMFSSFTIDKCGSRGMKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00459 274 MobiDBLite consensus disorder prediction 68 97 - -
Spst6g00459 274 Pfam AUX/IAA family 19 265 IPR033389 -
Spst6g00459 274 SUPERFAMILY CAD & PB1 domains 150 255 - -
Spst6g00459 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 261 IPR003311 GO:0005634|GO:0006355
Spst6g00459 274 FunFam Auxin-responsive protein 151 266 - -
Spst6g00459 274 Gene3D - 150 268 - -
Spst6g00459 274 ProSiteProfiles PB1 domain profile. 156 256 IPR000270 GO:0005515
Spst6g00459 274 MobiDBLite consensus disorder prediction 133 154 - -
Spst6g00459 274 MobiDBLite consensus disorder prediction 68 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00459 Spst-Chr6 4249814 4251902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00459 125 264 B3 DNA Binding Superfamily AT4G23980 28.571 9.30e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst6g00459 AUX_IAA 5.2e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00459 K14484 - gmx:100796888 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00459 6 4249814 4251902 Spst6g00459 6 4249814 4251902 ECH