Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00455 ATGGAAAGGGTGTTGTCAGTGGATGAAATATCGGAGCAATTTTGGGTGGCAGCGAGGAAGGAATCATGCAAGTCAGAGTCAAAGATGAATCGCAGTGAATCGGAGTGGGCTTTTCAGCAGTTTCTGCAGGAAGCAGCTTCTCCTACTTCATCTTCTTCTTCTGATGTTAAACCTAAAAAGGATCCCAACATCCCTGCAACTCTAAATGTTGATTCCCAGGATTACCAAGCTATTCTTAAGACCAAGCTTAACCTCGCCTGTGCTGCTGTCGCTTTGACTCGGGGATCTCTGTTAAAATCTCAAAATCCGGTCACTTTCCCTGACAGTGGATCCCAGACATCTAATCTTTCTGAAGTCGAATCGCAGGCTACCTTAACAGGCTCTGGTCCTTTGGGAAATGATCCCTCTCAATTACAAAATAAAGATGTCAAAGCACCATTCGGGATACCTTCCTCACCCTCCCTGCAAAAGAAACCTGCTGTTGCAATAAGGCCAACAATAAGTGGATCATCAAGAGAACAATCGGATGATGAGGAAGCGGAGGAAGAGATTAATATGACTGACAACAAGAACCCTACTGATGCAAAACGAGTAAGGAGGATGCTTTCTAATAGGGAGTCTGCCAGACGTTCAAGAAGAAGAAAGCAGGCTCATTTAAGCGAGCTAGAGACACAGGTCTCCCAATTAAGAGGCGAAAATTCTTCTTTGTTAAAGCGCTTAACGGATGTGAGCCAGAAATACAATAATGCTGCAGTTGACAACAGAGTTTTGCAAGCTGATGTTGAAACATTGAGAGCTAAGGTGAAGATGGCTGAAGAGACAGTGAAAAGGATTACTGGGTTGAACCCAATGTTTCATGTCATGACTGAGATGTCATTAATGGAAATACCATTTTTTGATGAAAGTCCTTCTGAGACATCAGCTGATGCTGCTGTTCCTGTGCAAGAAGACCCAAATCATCATCTTTGTCAAGCCACTTCCAACATTGGGTTGGGAGGCATTTCTTCAATTAAAACTGTGCAACATAACGTTGCAGCAGTGGTAAGGGGGAACAAAACTGGGGGAGCAACTTCCCTGCATAGAGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGCAGATTCACGTGGACCTCCGTCTAGTGGAGAGCAATAA 1164 0.4433 MERVLSVDEISEQFWVAARKESCKSESKMNRSESEWAFQQFLQEAASPTSSSSSDVKPKKDPNIPATLNVDSQDYQAILKTKLNLACAAVALTRGSLLKSQNPVTFPDSGSQTSNLSEVESQATLTGSGPLGNDPSQLQNKDVKAPFGIPSSPSLQKKPAVAIRPTISGSSREQSDDEEAEEEINMTDNKNPTDAKRVRRMLSNRESARRSRRRKQAHLSELETQVSQLRGENSSLLKRLTDVSQKYNNAAVDNRVLQADVETLRAKVKMAEETVKRITGLNPMFHVMTEMSLMEIPFFDESPSETSADAAVPVQEDPNHHLCQATSNIGLGGISSIKTVQHNVAAVVRGNKTGGATSLHRVASLEHLQKRIRGGADSRGPPSSGEQ 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00455 387 Coils Coil 254 274 - -
Spst6g00455 387 MobiDBLite consensus disorder prediction 100 140 - -
Spst6g00455 387 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
Spst6g00455 387 MobiDBLite consensus disorder prediction 44 67 - -
Spst6g00455 387 Gene3D - 195 250 - -
Spst6g00455 387 MobiDBLite consensus disorder prediction 202 221 - -
Spst6g00455 387 Coils Coil 205 239 - -
Spst6g00455 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 248 IPR004827 GO:0003700|GO:0006355
Spst6g00455 387 Pfam bZIP transcription factor 195 248 IPR004827 GO:0003700|GO:0006355
Spst6g00455 387 MobiDBLite consensus disorder prediction 100 196 - -
Spst6g00455 387 Pfam Basic leucine-zipper C terminal 263 376 IPR020983 -
Spst6g00455 387 PANTHER BASIC LEUCINE ZIPPER 63 1 375 - -
Spst6g00455 387 SUPERFAMILY Leucine zipper domain 196 247 IPR046347 GO:0003700|GO:0006355
Spst6g00455 387 CDD bZIP_plant_GBF1 197 248 IPR045314 GO:0003700|GO:0006355
Spst6g00455 387 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Spst6g00455 387 FunFam BZIP transcription factor 194 245 - -
Spst6g00455 387 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00455 Spst-Chr6 4226395 4230164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00455 1 285 bZIP Transcription Factor Family AT4G02640 39.210 2.24e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Spst6g00455 bZIP_C 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00455 K25784 - gmx:778137 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00455 6 4226395 4230164 Spst6g00455 6 4226395 4230164 ECH
Spst6g00455 6 4226395 4230164 Spst10g00150 10 1498382 1503457 PCT