Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00452 ATGGAGTTTCCTCCAAACCTTTTGCCAGACGAGGCAAGCCCAAGATGGTTAAACAAAGGAGACAATGCGTGGCAGTTAATGGCAGCGACAGTGGTGGGTCTCCAAAGTATTCCGGGGCTGGTTATTCTCTACGGAAGCCTTGTGAAGAAAACATGGGCCATTAACTCCGCTTTCATGGCCTTCTATGCCTTCGCGGCTGTTCTTCTCTGCTGGGTCGCGTGGGGTTTCCGTATGTCGTTCGGCGAGAAAATGGTGTTCTTCTTGGGGAAACCAGGGGCGGCGCTGGACGAGGAGTTTCTCCTGGGGCAAGCGTTTGTGGGGCTCTTTCCCACCGCTACCATGGTGTTTTTTCAGGGTGTGTTTGCGGGGATTACTTTGATCCTCATAGCTGGGGCGTTACTCGGGAGAATGAACATTCTTGCTTGGATGCTGTTTGTGCCGCTTTGGGTTACTTGTTCATACACGGTCACTGCGTTTAGCATTTGGTGCCCCGAAGGGTGGTTGGCGAAGCTTGGGCTTATTGATTTCTCTGGAGGATATGTTATTCACCTCTCTGCTGGAGTTGCTGGTTTCACTGCAGCTTATTGGGTGGGTCCAAGATGTGAGAAGGAGAGAGAAAGGTTTCCATCAAACAACTTGATTGTAGTGCTTGCAGGCGCAGGCCTGCTATGGATGGGTTGGAGTGGGTTCAACGGTGGAGGTCCGTTCGTGGTGAGCACGGTGGCATCTCTGGCCGTCCTCAACACACACGTGTGCGCTGCTGCCAGCATCATGGTGTGGGTCCTTCTTGACACTTTCTACTTTGGTAAGCCCACCGTGTTTGGCGCCGTACAAGGCATGATCACCGGCCTCGTTTGCATCACACCTGCTGCAGGAGTTGTGCAAGGGTGGGCAGCGATCTTGATGGGTTTGATCTCAGGAAGCGTTCCCTGGTACACAATGATGGTCCTCCATCACAAGCTACCTTTCTTGAACCAAATCGACGACCCCATGGCGGTGTTCCACACCCACGCCGTCGCCGGCGCTCTCGGCGGCATCCTCACCGGCCTCTTCGCCGTTCCTAAACTCTGCCGTCTCTTCTACATGGTCCCCGATTGGGAAAAATACATTGGCCTAGTCTATGGCCTCCAGAACGGTGCAACCGGAGCCGGTTTAAGACAAATGGGCATCCAAATCGGGGCCATAGTTTTCGTGATCATCTTCAACTTCGTTACGACGAGCTTGATTTGCTTGTTGGTGGGGGCCATAGTACCTCTCAGGCTTCACACCGATTCGTTGCAATTGGGTGACAAGGTATTGCATGGAGAAGAGGCTTTCGCTTTGAATGACGAGCCTGCCAAGTTTGAGAACCTGAAGCACAATGAAGTTTATGATACTCAAGAATTTTCCTTCGTCAGAGACCCCAGGGCACTAAGCCAGCTTCAAATGGTATAA 1434 0.5237 MEFPPNLLPDEASPRWLNKGDNAWQLMAATVVGLQSIPGLVILYGSLVKKTWAINSAFMAFYAFAAVLLCWVAWGFRMSFGEKMVFFLGKPGAALDEEFLLGQAFVGLFPTATMVFFQGVFAGITLILIAGALLGRMNILAWMLFVPLWVTCSYTVTAFSIWCPEGWLAKLGLIDFSGGYVIHLSAGVAGFTAAYWVGPRCEKERERFPSNNLIVVLAGAGLLWMGWSGFNGGGPFVVSTVASLAVLNTHVCAAASIMVWVLLDTFYFGKPTVFGAVQGMITGLVCITPAAGVVQGWAAILMGLISGSVPWYTMMVLHHKLPFLNQIDDPMAVFHTHAVAGALGGILTGLFAVPKLCRLFYMVPDWEKYIGLVYGLQNGATGAGLRQMGIQIGAIVFVIIFNFVTTSLICLLVGAIVPLRLHTDSLQLGDKVLHGEEAFALNDEPAKFENLKHNEVYDTQEFSFVRDPRALSQLQMV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00452 477 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Spst6g00452 477 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Spst6g00452 477 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Spst6g00452 477 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886
Spst6g00452 477 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Spst6g00452 477 FunFam Ammonium transporter 6 442 - -
Spst6g00452 477 SUPERFAMILY Ammonium transporter 16 421 - -
Spst6g00452 477 Gene3D Ammonium transporter AmtB like domains 8 457 IPR029020 -
Spst6g00452 477 PANTHER AMMONIUM TRANSPORTER MEP2 6 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Spst6g00452 477 NCBIfam ammonium transporter 21 438 IPR001905 GO:0008519|GO:0016020|GO:0072488
Spst6g00452 477 Pfam Ammonium Transporter Family 23 438 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00452 Spst-Chr6 4206173 4207800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00452 112 472 Inorganic Solute Cotransporters AT2G38290 51.781 5.31e-124 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00452 K03320 - gmx:100782944 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00452 6 4206173 4207800 Spst6g00452 6 4206173 4207800 ECH