Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00445 ATGGAGAGCCCAATGCCTGTTCTGGCTAATAAAACCCTACAAGAATTCTTCAAAGTTTTCCTCATCCACAAAGGTTCTACCCAGTTGCAATTACCAACATCTTTCACCAAGTTCTTCAATGAAATTGCACCATGCAAGGTCACTCTTGTAGATCAGGATGGAAAATGTTTGGATGTTAAATTGGAGAAAATTGAGGGTCGTTTGGTTTTTAAGAATGGGTGGCAGCAATTTACCCAGGAGAAAAATTTAGAAGAGGGGGACTTTTTGGTTTTTCAGTATGATGGCATGTCTACCTTTAATGTTAAGATATTTTCGAAAACTGGGTGCAAGAAAGTGGCTGCACCTCCAAATAGTGAAAAAATTGTTCCCATTGTGAATTTGGAAGAAGATTCTAATCAGCATAGTAATAAAAACCAGAGCAATGGTGCATGTCCATCCAAAGGAGCTCGATAA 453 0.3863 MESPMPVLANKTLQEFFKVFLIHKGSTQLQLPTSFTKFFNEIAPCKVTLVDQDGKCLDVKLEKIEGRLVFKNGWQQFTQEKNLEEGDFLVFQYDGMSTFNVKIFSKTGCKKVAAPPNSEKIVPIVNLEEDSNQHSNKNQSNGACPSKGAR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00445 150 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Spst6g00445 150 SMART B3_2 16 107 IPR003340 GO:0003677
Spst6g00445 150 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
Spst6g00445 150 PANTHER B3 DOMAIN-CONTAINING 14 137 - -
Spst6g00445 150 SUPERFAMILY DNA-binding pseudobarrel domain 15 109 IPR015300 -
Spst6g00445 150 MobiDBLite consensus disorder prediction 128 150 - -
Spst6g00445 150 CDD B3_DNA 16 105 IPR003340 GO:0003677
Spst6g00445 150 Gene3D - 7 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00445 Spst-Chr6 4145193 4146132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00445 7 111 B3 DNA Binding Superfamily AT5G66980 45.872 4.03e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst6g00445 B3 1.7e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00445 - - gmx:102669908 195.282