Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00443 ATGGGAAAAGCCAGCAAATGGATCAAAACCTTCCTTCTAGGAAAAAAAGATGAGAAAATCAAGAAGATTGATGCATTCTGCCCCGAGGATATTAAGAGTTCCAACACAGGAAGTCTGATAGTGAGTCCCAAAGTGAAGCGCAGATGGAGCTTCGGAAAACTAACAAGTGGAAGAATAGCGAGCAAGATAGTAGGGCATAAATTTTCCAGGTCTTTTGATTCAGGTGACTCTGCAAAACTGCAAATACAAGCCTTGTTGGAAACCAAGACTCCAAGGCGTCTACCAACACCACTGGCAAGGACCCATAAAGATAAAAACGAAGCTGCTACAAAGATTCAGGCTGGCTTTCGCTCATATTTGGCAAGGAGAGCATTGCATGCTTTAAGGGGGTTAGTCAAGTTACAAGCACTAGTGAGAGGTTACCTTGTGAGGAAACAGACCACTGCTACCCTGCGTGGCATGCATGCGTTGATGGCCATACAAGTTAGAGCACGAATTCACAGAATTCAGATGGTAGAGGAAGTAAATCTCCTTGGAAAACATCCTCCACAACATAGAGTAGTTCCACACTTCAGAGATGTCATAACAGAAGAAAATAAAGATTCAAAGGATATGAGTGTTGAAGAAATGTTGGAGGTTTTGAAAAGCAGAAGTGGTCCTCTGGATGGTTCATATGTTAAGGCCAGAGAACGTGATTCCATGAGATTCTATTCGAAGCATGTGCCGGTTGTTTCTAAACGAAAAATTCAATACAAGAATACTCAAATTGTAGAACCAAACAGCCCGGAAAACTACCGTGCCATCTCTGAATTTAACACAGCGACAATGGCCTTTTCAACTTCTCTGCGTCACTCAGTGCCTCACCGCCAATCACTGTCACCAAATTACATGAACAAGACTGAATCTTCAAGGGCTAAAACAAGGTCGCAGAGTGAACCAAAACAACGACCCAAGCGGGTAATGAGGCACAAAGGCAAGTCTGTGGAATCTCCATTGAATGGTCCAAGACAAAATCTGTTCTCAAACTCATTACGCTTTGATCATGAAAGCCTGGACCATTGGGTTATCAATCTTCACGGGTCAATGAAGGACAGCAAGCGCGATTCCATTGGAAGCAGCTCGGTCACTACTGATTCTTATTATTGA 1146 0.4311 MGKASKWIKTFLLGKKDEKIKKIDAFCPEDIKSSNTGSLIVSPKVKRRWSFGKLTSGRIASKIVGHKFSRSFDSGDSAKLQIQALLETKTPRRLPTPLARTHKDKNEAATKIQAGFRSYLARRALHALRGLVKLQALVRGYLVRKQTTATLRGMHALMAIQVRARIHRIQMVEEVNLLGKHPPQHRVVPHFRDVITEENKDSKDMSVEEMLEVLKSRSGPLDGSYVKARERDSMRFYSKHVPVVSKRKIQYKNTQIVEPNSPENYRAISEFNTATMAFSTSLRHSVPHRQSLSPNYMNKTESSRAKTRSQSEPKQRPKRVMRHKGKSVESPLNGPRQNLFSNSLRFDHESLDHWVINLHGSMKDSKRDSIGSSSVTTDSYY 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00443 381 SMART iq_5 127 148 IPR000048 GO:0005515
Spst6g00443 381 SMART iq_5 104 126 IPR000048 GO:0005515
Spst6g00443 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 147 IPR027417 -
Spst6g00443 381 PANTHER IQ-DOMAIN 5-RELATED 1 333 - -
Spst6g00443 381 Pfam IQ calmodulin-binding motif 132 146 IPR000048 GO:0005515
Spst6g00443 381 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Spst6g00443 381 Gene3D - 102 156 - -
Spst6g00443 381 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Spst6g00443 381 MobiDBLite consensus disorder prediction 282 337 - -
Spst6g00443 381 ProSiteProfiles IQ motif profile. 105 133 IPR000048 GO:0005515
Spst6g00443 381 MobiDBLite consensus disorder prediction 282 304 - -
Spst6g00443 381 Pfam Protein of unknown function (DUF4005) 262 324 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00443 Spst-Chr6 4139791 4141294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00443 1 350 IQD Protein Family AT4G14750 32.402 1.57e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00443 - - var:108318790 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00443 6 4139791 4141294 Spst6g00443 6 4139791 4141294 ECH