Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00442 ATGGCGAAAGAGCTTCTGCAGCTTCCTCTGCTGCTGGTCCATCATCGGTTCTCAGGAGAGGGAAATCTCTTGCTAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGGAAAGGTGCTTTTGGTTCTGCTCTTCTAGTGAAGCATAAGCATGAGAAGAAAAAATATGTACTGAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGGTCTGCTCACCAGGAGATGGAGCTCCTCTCCAAATTAAGAAACCCATTTATTGTGGAATATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTATGCATTATTATAGGCTACTGTGAGGGTGGAGACATGGCAGAGACTATAAAGAAAGTTAATGGTGTTATGTTTCCAGAGGAGAAACTATGTAAGTGGCTTGTTCAGCTTCTTATGGCACTTGATTACTTGCGTGTGAACCATATTCTTCACCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCACAACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGAGTTCCGATGATCTAACTTCATCTGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTTCTTGCTGATATACCTTATGGCTCTAAATCAGATATTTGGTCCTTGGGTAATCGTGGTCTTGTTAAAAGCATGTTGCGGAAAAATCCAGAGCTTAGACCTAGTGCTGCAGAGCTACTCGGGCACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACTTTGCCAGGTCATTGGCCAGAATCCAGATACATGAAGAAAACTAGATTTTTGAAGTCAGAAGATGATCCCGTTTCCATCTCTGGGTATAAGTGGCATTCTTTTAGCAATGATCGGACATTAAATCCGAGTGTATCAGGAGCGGAGCAAGATTCTCTATGCACTACGCTAGAGATAGACTGCACTCCTGATAATTTAAATGAAAGATTTGCTGAACTTTCTACGGGAGACAACCACGATTTAAAATCACTCCATAAGTCAAGTTTTTCCAGAACTTCTAGTAATGCCAAGACTTCTAGGCTAACTGGATCAAAAGCTTCTACCATTCCCAAGAAATCAATGTTTCTTGTTTCACACAATACGAAACAACCTGTCCATACAACTCGTAGAGCATCATTGCCGTTCCCACGAAGTTGTGCCATTCAGCAGCCTCCTCGCAGGCCCAGTATTGGTTTACTTGACCATGTAAATTCACCCAATATTTCAGTTAACTCTCCCCGGATTGATAGGATAGCAGAATTCCCGTTAGCATCATATGAGGACCAATTGTTTCCCATCAATAGATCTTCACCAAACTCGGCACAGAGTTCCTCAGGCTCCCCTCCTTGCGGCAATAATTCAAATTTGATAGACAAATGCACAATCAAGGTATGTGACACATCGTATGCTAGGCCAGGCTGTACGGATGCTTGGCAGGGGATCAAGCGCAACATGTTCAAGAAAAACGATGAGGATAAAAGTGGCTCATCTGATCAACATGCAACAACTGGAGCATCAAGCCACAACTCTTCAGACTTGCGCCGCCGACAGTTTGATACTTCATCATTCCAACAAAGGGCTGAGGCATTAGAAGGTTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTATGGAGAACTTGGAGTTTTATTAAAACCTTTTGGGCCAGGGAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAACCGAGAACAATTCACTTAA 1806 0.4258 MAKELLQLPLLLVHHRFSGEGNLLLIDDMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAETIKKVNGVMFPEEKLCKWLVQLLMALDYLRVNHILHRDVKCSNIFLTKDHNIRLGDFGLAKMLSSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGNRGLVKSMLRKNPELRPSAAELLGHQHLQPYVLKVHLKINSPRRSTLPGHWPESRYMKKTRFLKSEDDPVSISGYKWHSFSNDRTLNPSVSGAEQDSLCTTLEIDCTPDNLNERFAELSTGDNHDLKSLHKSSFSRTSSNAKTSRLTGSKASTIPKKSMFLVSHNTKQPVHTTRRASLPFPRSCAIQQPPRRPSIGLLDHVNSPNISVNSPRIDRIAEFPLASYEDQLFPINRSSPNSAQSSSGSPPCGNNSNLIDKCTIKVCDTSYARPGCTDAWQGIKRNMFKKNDEDKSGSSDQHATTGASSHNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQFT 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00442 601 FunFam Serine/threonine-protein kinase Nek2 29 111 - -
Spst6g00442 601 MobiDBLite consensus disorder prediction 448 468 - -
Spst6g00442 601 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Spst6g00442 601 SUPERFAMILY Protein kinase-like (PK-like) 29 247 IPR011009 -
Spst6g00442 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Spst6g00442 601 MobiDBLite consensus disorder prediction 350 367 - -
Spst6g00442 601 MobiDBLite consensus disorder prediction 504 536 - -
Spst6g00442 601 Gene3D Transferase(Phosphotransferase) domain 1 112 219 - -
Spst6g00442 601 Pfam Protein kinase domain 32 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00442 601 ProSiteProfiles Protein kinase domain profile. 32 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00442 601 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Spst6g00442 601 SMART serkin_6 32 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst6g00442 601 MobiDBLite consensus disorder prediction 344 367 - -
Spst6g00442 601 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 221 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00442 Spst-Chr6 4133299 4139213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00442 29 218 MAP Kinase Kinase Gene Family AT4G26070 36.458 1.21e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Spst6g00442 Pkinase 8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00442 K08857 - gmx:100796019 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00442 6 4133299 4139213 Spst6g00442 6 4133299 4139213 ECH
Spst6g00442 6 4133299 4139213 Spst10g00143 10 1416500 1422894 PCT