Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00441 ATGTTCGATGGAGCACCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTCCACTTGTCCTTCCCTCTCCATGCCTCTTCAACTCCCCCAACTACCTTCCTACCCTTTGATCCCTATAACCCTTCTCAATCTCAACACCACTTGCCACTCCAAACCAATCTCTTGCACCCATTGCACCCCCCTTCTCCCACCCACAAACATGAACAACAACGCAAGGTTGCTCCAATCCACAACGTCCACATTCAAACAGATCAAACACAATTACCAGACCTAACCGATTCCTGGACCAACGATGAAGTGCTTGCACTTTTGAGAATCAGATCTAGCATGGAAAATTGGTTCCCGGAGCTCACATGGGACCATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTTGAAGATGAGAGTAGATATTTCGACAACATTAACAACTTCGGCAAGAACAATTACCGGTTCCTTAGCGAACTGGAGGAGCTTTGTCAAAACCCTGATTCGAGTGGTGGTGGTGGTGACCGTGCAGGAGATAATGGAGTTGTGAGAAGTGAAAAGACCCTTCACCTTGGAGGAGACAACATGGGCCACCAACAATGTGATGGAACAAGTGACAAGGTTGTGGTGGAAAAGTCAAAGGAGCGCAAGAGGAAGAGACGTGATAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTGTTGTCAACAAGATGATGGCTCAACAAGAAGAGATTCACAACAAGCTCCTCGAGGACATGGTCAAAAGGGACCAAGAGAAGTTCGCCAGAGAGGAGGCGTGGAAGAAGCAAGAGATGGAGAGGATGAACAAGGAGCTTGAGATCATGGCACAGGAGCAAGTTATTGCCGGAGATAGACATGCCACCATAATTGAGTTCTTAAAGAAATGTGCAACAACTTCATCATCCCCTCCAAGCCAAAATCCCAAGCACTACAACAAAGATGGTTCAAGTCTTCCAAATAGTTTATTGCACTCGCAAAACCCTAATAGTCCTTCCAGCGAAGACAACAATCTCGATCCAACACCATCTCCTAAAATGATTCTGAATCATGATCAAACCACATTGGGAGCAGAAAACCCTAGCTCAAGTGACACATTGTTACAAGTTCCTTCTTCCTCCAATTCTTCTCCAACTCCCCACAACCCTAGTTCTTCGCTCAATAGCCATGATAATATCATTCCATTGGAGTCAAATTTAGTTTCCACACATAAGGCAACCTCAATAGCCACTATAGTCAGCGCTGAGAATTCGAAAGAGGATGTTGGGAGAAGATGGCCTAGGGATGAAGTGTTAGCACTGATAAACCTGAGGTGCACGAGTATAAGTAACAACAACAATGAAGAGAAAGAAGGAAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGCTGGGTTACAAGAGAAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAACAAGAAAAGGTCCATTAACTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAACTTGTGGCACAGTCTGAAAGTGAAGGGAACTACATGAGTCCAACCGCTAATTCCGGCCAACTGCCACCACCGGATGATGATGAACAAGTTCAAGCTGATGAGTCTTCTCAAGTGGGGTCTGGTAGTTTGGTTCAGTATGCATGTTAA 1752 0.4555 MFDGAPDQFHQFIAPRTTLPLHLSFPLHASSTPPTTFLPFDPYNPSQSQHHLPLQTNLLHPLHPPSPTHKHEQQRKVAPIHNVHIQTDQTQLPDLTDSWTNDEVLALLRIRSSMENWFPELTWDHVSRKLAELGFKKSAEKCKEKFEDESRYFDNINNFGKNNYRFLSELEELCQNPDSSGGGGDRAGDNGVVRSEKTLHLGGDNMGHQQCDGTSDKVVVEKSKERKRKRRDRFEMFKGFCESVVNKMMAQQEEIHNKLLEDMVKRDQEKFAREEAWKKQEMERMNKELEIMAQEQVIAGDRHATIIEFLKKCATTSSSPPSQNPKHYNKDGSSLPNSLLHSQNPNSPSSEDNNLDPTPSPKMILNHDQTTLGAENPSSSDTLLQVPSSSNSSPTPHNPSSSLNSHDNIIPLESNLVSTHKATSIATIVSAENSKEDVGRRWPRDEVLALINLRCTSISNNNNEEKEGNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDVNKKRSINSRTCPYFHQLSCLYGQGKLVAQSESEGNYMSPTANSGQLPPPDDDEQVQADESSQVGSGSLVQYAC 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00441 583 MobiDBLite consensus disorder prediction 314 408 - -
Spst6g00441 583 FunFam Trihelix transcription factor GTL2 442 506 - -
Spst6g00441 583 PANTHER FI21293P1 62 575 - -
Spst6g00441 583 CDD GT1 99 153 - -
Spst6g00441 583 CDD GT1 440 508 - -
Spst6g00441 583 MobiDBLite consensus disorder prediction 541 583 - -
Spst6g00441 583 FunFam Trihelix transcription factor GT-2 99 155 - -
Spst6g00441 583 MobiDBLite consensus disorder prediction 568 583 - -
Spst6g00441 583 MobiDBLite consensus disorder prediction 541 559 - -
Spst6g00441 583 ProSiteProfiles Myb-like domain profile. 441 501 IPR001005 -
Spst6g00441 583 Pfam Myb/SANT-like DNA-binding domain 97 160 IPR044822 -
Spst6g00441 583 Pfam Myb/SANT-like DNA-binding domain 440 527 IPR044822 -
Spst6g00441 583 Gene3D - 442 506 - -
Spst6g00441 583 Gene3D - 99 155 - -
Spst6g00441 583 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00441 Spst-Chr6 4124046 4126254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00441 1 533 Trihelix Transcription Factor Family AT5G28300 39.967 2.51e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst6g00441 Myb_DNA-bind_4 3.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00441 - - gmx:100801868 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00441 6 4124046 4126254 Spst6g00441 6 4124046 4126254 ECH
Spst6g00441 6 4124046 4126254 Spst10g00142 10 1397774 1399962 PCT