Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00431 ATGGCGGACAAGGCTGTTACAATCCGAACCCGCAAGTTCATGACAAACAGGCTCCTTTCTAGGAAGCAGTTTATTGTTGATGTACTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGAACTTAAGGAGAAGCTTGCTCGAATGTATGAAGTCAAAGACCCTAACACTGTATTTGTCTTCAAATTCCGAACACATTTTGGTGGTGGCAAATCTACAGGTTTTGGTTTGATTTATGATTCCGTCGACAATGCTAAGAAGTACGAGCCCAAGTACAGACTCATCAGGAATGGTCTTGATACTAAGGTAGAAAAGTCAAGGAAACAAATGAAGGAGAGGAAAAACAGAGCAAAGAAGATTCGAGGAGTAAAGAAGACTAAGGCATCGGATGCTGCTAAGGCTGGAAAGAAGAAATGA 414 0.4227 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00431 137 FunFam 40S ribosomal protein S24 1 137 - -
Spst6g00431 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst6g00431 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst6g00431 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Spst6g00431 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Spst6g00431 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Spst6g00431 137 Gene3D - 1 132 - -
Spst6g00431 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00431 Spst-Chr6 4054633 4055982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00431 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 86.364 1.36e-84 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00431 K02974 - gmx:100802918 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00431 6 4054633 4055982 Spst6g00431 6 4054633 4055982 ECH
Spst6g00431 6 4054633 4055982 Spst10g00131 10 1319366 1320825 PCT