Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00421 ATGGATGCCTTTAAACGTTTGCCTATGGCGAGGAGAGGAACTGGATCTACGGGAAAGAGCATAGAGCTTCTTGCTAACCATTTTAGACTTGATATGGGGAGGAACAAAGGCTACTTCTTCCATTATGATGTGTTTTTCCCCTTTCTTCTTTCCTTTTACCATATCTTTTGTGTTGCCTTGCGTAATGAAGATGGGAAATCAGTTCAAGCCAAGGGCATAGGGAGAAAAGTCCTAGATGAGGTTTGGAGAACATGTACTGAACTGGCAGAGTTTAGTTTTGCATATGACGGTGACCAAAGTTTATTCACTCTTCATCCTCTACCATGTGAGAAGCAACAATATACTGTTGAGTTAAAGCAAACTTTATCAAGGAGGGTTGGAAGCCCCGATAAGCGTCTTAATGGAGGAAATATAAAAATTCACAATTCGGATATCAACTACGAGACCACAATTCCGTTGCGAGCTATTGAGAATACAATGGATGATCAGGCTTCTGGAAACTCTTCGGAAGCACATGATGTTCCAAACAACATTCAGAGACAGCATGCTGCAACAATACCACGATCTCGGTTGAAAGTTATCACTGTGGATATCAACTATGTAGCCAAAATTCCATTGCAGGAAATTGCAAATGCATTGAGTGGTCAGAATTCTGGGAAGTTTCAAGAAGCACTGAGGGTTCTAAACATGGTGCTAAGACAGCATGATGCAGAAAGGGGATGCCTCTTTGTTCGCCATTCCTTCTTTCAAAGCAATGAGATAAATTGTATGGATATTGGTGGTGGTGTGCTAGCCTGCGGTGGTTTCCGCTCGAGCTTTCGATCCACACAACGAGGATTATCTCTCAACGTTGATGTTTCGAATACTATGATTGTAAAGCCTGGACCTGTGGTGGACTTCCTTCTCCAGAATCAGAATGTTGGGAACATTAAAAACATTAACTGGACAAAGGCAAAAAAGATTGCTTAA 969 0.4169 MDAFKRLPMARRGTGSTGKSIELLANHFRLDMGRNKGYFFHYDVFFPFLLSFYHIFCVALRNEDGKSVQAKGIGRKVLDEVWRTCTELAEFSFAYDGDQSLFTLHPLPCEKQQYTVELKQTLSRRVGSPDKRLNGGNIKIHNSDINYETTIPLRAIENTMDDQASGNSSEAHDVPNNIQRQHAATIPRSRLKVITVDINYVAKIPLQEIANALSGQNSGKFQEALRVLNMVLRQHDAERGCLFVRHSFFQSNEINCMDIGGGVLACGGFRSSFRSTQRGLSLNVDVSNTMIVKPGPVVDFLLQNQNVGNIKNINWTKAKKIA 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00421 322 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 319 - -
Spst6g00421 322 Pfam N-terminal domain of argonaute 19 170 IPR032474 -
Spst6g00421 322 SUPERFAMILY PAZ domain 218 306 IPR036085 GO:0005515
Spst6g00421 322 SMART DUF1785_2 242 294 IPR014811 -
Spst6g00421 322 Pfam Argonaute linker 1 domain 244 292 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00421 Spst-Chr6 3967839 3969356 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00421 190 303 Eukaryotic Initiation Factors Gene Family AT5G43810 34.211 1.22e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00421 K11593 - tcc:18590854 261.922