Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst6g00420 ATGTGGGACTTCTTTCTTCACAGATTTCTCTTGAAGCAAAAGGGTGAAGAAAAGGAGAATGAAATCACAGTTTATGACTACTTTACAAACAATAAAATGATTGGCCTGCATAGTTCAGCTGATATGCCGTGCATCAATGTTGACAAACCACAACGCCCGTGTTACTTTCCGATAGAGCTGTGTGAGTTGGTACCATTGCAGCGGTACACCAAGGCACTGACAAATTTGCAAAGGGCTCAGCTAGTGGAAAAGACAAGGCAAAGTCCCAAAGACAGGAAAGCTGAGGTTGAAAAATCCTTAAGAAGCAACGAATATGATAACGAATTAATGCTTCGCTCTCTTGAGATTAACATTGATCATAACATAACAAGACTTGAGGGTCGTGTATTGCAACCTCCAGAGGCAAGTTTACCTATATTATATGAATTTCTTATAGTTGGACAACAGAGATGCATCACTCCCCTCCATGGGCGCTGGAATTTTATTGATAAGCAACTATTTGCCCCTGTGACAATTGATAAATGGGCCGTTGTAAGCTTTTCAAGTGAGTGCGACACAACACTGTTGATAGAAAACATTGACAATATTAGTGCTGCTCTAGGAATGAACATGAAGAATTTACTACACGAGAAGGTAATTGAAGAGAATTCTAGATTTATAAATCAACCAGCACATGTGAGGGTAGAACAAATGCATAAAAAGTTGGACAAGACTCTACCAGGAAAACCTAGTTTTCTGTTGTGTATTCTTCCAACAAAGAATTCTGATATTTACGGTCCGTGGAAAAAGAAATTTTCAATTGATGGCGGGATCGTAACACAATGTATTAGTGCACAACAAAAATTTGATCATCAGTACATTACTAATGTACTCTTGAAAATCAACCTGAAGTTTGGCGGGGTGAATACCAATCTGTCAATGGAGCATGAGAAGAAAATTCCTATTGTTTCTGCTAAACCCACCCTAATTCTTGGTATGCATGTTTCTCATGGATCTCCTGTTGGATTAAATGTGCCCTCCATTGCTGCGGTTGTGAGCTCAAGATGTTGGCCTCAAATTACGCGTTATAGAGCTGCTGTCCGTGCACAGTCAGCAAAAAATCAGTTGATTCAATCTTTGTTTATGCCTGATGAGGCTGATCATCCTTCAGAGGACAAGGGTATCATCAGGGAGCTACTGTTGGAATTTTTCGAAAGTTCAAAGAGTATAAAGCCTCAACAAATTATCATTTTCAGGGATGGAGTGAGCGAATCACAGTTCAAACGAGTACTAAATGATGAGTTAAATCAAATAATACAGGCATGCAAATTACTTGATGGAGACTGGGACCCAAAGTTCACTTTGATTATAGCCCAAAAGAATCATCATACTAGGTTCTTCAACGCCAATGATGAAGATTATGATGTTCCAGTTGGTTTGTCACCTCAACAGAAAAAGAAAAGAAAAGTGAATGCTGCTGAAACGACCCGCCAACATGGAACAACTCGACCTGTTCACTACCATGTTTTACACGATGAAATCGGGTTCTCAACTGATGAACTGCAGGAACTAGTGCATTCTCTATCTTATATGTATCAAAAGAGCACAGCTGCTGTATCGTTAGTTGCTCCCCTTTGTTATGCCCGCATGGCGGCTAGACAGGTGACAAAATTTGTGAAGTTTGATAAAGAATGTAAGGCTTCTGGCAACCATGGTGGAGGCACATCTTCTGCTGCACCTCCATTATCAATTCTTCCCGAGCAACTCATGGAGAGCATATACTTATGTTAA 1770 0.4006 MWDFFLHRFLLKQKGEEKENEITVYDYFTNNKMIGLHSSADMPCINVDKPQRPCYFPIELCELVPLQRYTKALTNLQRAQLVEKTRQSPKDRKAEVEKSLRSNEYDNELMLRSLEINIDHNITRLEGRVLQPPEASLPILYEFLIVGQQRCITPLHGRWNFIDKQLFAPVTIDKWAVVSFSSECDTTLLIENIDNISAALGMNMKNLLHEKVIEENSRFINQPAHVRVEQMHKKLDKTLPGKPSFLLCILPTKNSDIYGPWKKKFSIDGGIVTQCISAQQKFDHQYITNVLLKINLKFGGVNTNLSMEHEKKIPIVSAKPTLILGMHVSHGSPVGLNVPSIAAVVSSRCWPQITRYRAAVRAQSAKNQLIQSLFMPDEADHPSEDKGIIRELLLEFFESSKSIKPQQIIIFRDGVSESQFKRVLNDELNQIIQACKLLDGDWDPKFTLIIAQKNHHTRFFNANDEDYDVPVGLSPQQKKKRKVNAAETTRQHGTTRPVHYHVLHDEIGFSTDELQELVHSLSYMYQKSTAAVSLVAPLCYARMAARQVTKFVKFDKECKASGNHGGGTSSAAPPLSILPEQLMESIYLC 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst6g00420 589 Pfam PAZ domain 18 81 IPR003100 GO:0005515
Spst6g00420 589 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 14 555 - -
Spst6g00420 589 SUPERFAMILY Ribonuclease H-like 229 549 IPR012337 -
Spst6g00420 589 CDD PAZ_argonaute_like 16 64 - -
Spst6g00420 589 Gene3D - 130 306 - -
Spst6g00420 589 Gene3D - 313 587 IPR036397 GO:0003676
Spst6g00420 589 Gene3D paz domain 6 71 - -
Spst6g00420 589 Pfam Piwi domain 246 552 IPR003165 GO:0003676
Spst6g00420 589 SUPERFAMILY PAZ domain 9 105 IPR036085 GO:0005515
Spst6g00420 589 ProSiteProfiles Piwi domain profile. 245 553 IPR003165 GO:0003676
Spst6g00420 589 SMART Piwi_a_2 245 553 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst6g00420 Spst-Chr6 3958267 3962836 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst6g00420 16 589 Eukaryotic Initiation Factors Gene Family AT1G48410 32.736 2.50e-92 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst6g00420 K11593 - gmx:100812218 675.626